Wall clock time and date at job start Mon Mar 30 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00453 * 2 1 4 4 H 1.48493 * 109.47624 * 240.00089 * 3 2 1 5 5 H 1.48501 * 109.46744 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47143 * 119.99568 * 3 2 1 7 7 C 1.37878 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47022 * 180.02562 * 10 9 7 12 12 S 1.81001 * 109.47282 * 180.02562 * 11 10 9 13 13 C 1.76201 * 100.00084 * 179.97438 * 12 11 10 14 14 N 1.29764 * 124.95219 * 180.02562 * 13 12 11 15 15 C 1.32092 * 116.85567 * 179.97438 * 14 13 12 16 16 C 1.50692 * 122.70802 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.47270 * 180.02562 * 16 15 14 18 18 C 1.33337 * 114.58692 * 359.97438 * 15 14 13 19 19 S 1.70961 * 124.95494 * 359.97116 * 13 12 11 20 20 H 0.97006 * 119.99471 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47406 * 59.99941 * 9 7 2 22 22 H 1.08998 * 109.46959 * 300.00165 * 9 7 2 23 23 H 1.08994 * 109.47552 * 60.00283 * 10 9 7 24 24 H 1.08998 * 109.47220 * 299.99825 * 10 9 7 25 25 H 1.08999 * 109.47514 * 59.99721 * 11 10 9 26 26 H 1.09006 * 109.47156 * 299.99296 * 11 10 9 27 27 H 1.09006 * 109.47290 * 300.02038 * 16 15 14 28 28 H 1.09003 * 109.47539 * 60.02137 * 16 15 14 29 29 H 0.96705 * 113.99958 * 179.97438 * 17 16 15 30 30 H 1.07999 * 125.95110 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 16 2.6562 -6.3629 -0.0004 13 6 1.5360 -7.7230 -0.0005 14 7 1.8844 -8.9730 0.0003 15 6 0.9094 -9.8642 0.0006 16 6 1.1639 -11.3495 0.0011 17 8 -0.0837 -12.0465 0.0007 18 6 -0.3181 -9.3436 0.0005 19 16 -0.1683 -7.5883 -0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 0.6239 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 2.8718 -3.6045 0.8894 24 1 2.8718 -3.6044 -0.8905 25 1 0.8537 -5.0446 -0.8913 26 1 0.8532 -5.0451 0.8887 27 1 1.7320 -11.6211 -0.8887 28 1 1.7314 -11.6207 0.8913 29 1 0.0039 -13.0096 0.0005 30 1 -1.2432 -9.9008 0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723370960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:59 Heat of formation + Delta-G solvation = -44.560813 kcal Electronic energy + Delta-G solvation = -13946.739403 eV Core-core repulsion = 11379.713063 eV Total energy + Delta-G solvation = -2567.026340 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.86983 -37.59560 -36.42228 -34.10334 -31.98847 -29.56819 -28.12869 -26.31181 -25.09847 -22.29576 -20.64803 -19.80402 -18.58912 -18.29729 -17.21043 -16.66355 -16.63924 -16.23333 -16.23020 -15.10988 -14.97682 -14.72282 -14.37423 -13.74658 -13.68384 -13.50102 -12.85714 -12.73906 -12.47720 -12.21004 -11.92349 -11.71693 -11.43948 -11.34639 -11.17670 -10.84927 -10.73694 -10.53882 -10.21174 -8.68975 -8.19514 -6.30070 -0.51894 -0.04096 0.01408 0.62584 1.27666 1.42969 1.45044 1.52608 1.52935 2.42586 2.82320 3.14637 3.87474 3.90114 3.98787 4.17410 4.24016 4.45764 4.47341 4.56953 4.74971 4.88390 4.93568 5.11920 5.50277 5.68251 5.83434 6.22723 6.42117 6.85762 6.86346 7.39174 8.91958 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.066398 B = 0.003418 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.597662 B = 8189.348704 C = 8579.896297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.114 4.114 12 S 0.004 5.996 13 C 0.003 3.997 14 N -0.476 5.476 15 C 0.048 3.952 16 C 0.163 3.837 17 O -0.581 6.581 18 C -0.235 4.235 19 S 0.152 5.848 20 H 0.264 0.736 21 H 0.000 1.000 22 H 0.000 1.000 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.411 0.589 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -21.916 -0.003 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.263 4.263 12 S 0.238 5.762 13 C -0.382 4.382 14 N -0.197 5.197 15 C -0.086 4.086 16 C 0.082 3.918 17 O -0.391 6.391 18 C -0.378 4.378 19 S 0.403 5.597 20 H 0.073 0.927 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.263 0.737 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.147 -20.451 -0.002 20.483 hybrid contribution -0.861 -0.489 0.000 0.990 sum 0.286 -20.940 -0.002 20.942 Atomic orbital electron populations 1.70077 1.07698 1.27872 1.51508 1.25926 0.95741 1.03208 0.94724 0.85537 0.78299 0.78271 0.79185 1.19212 1.20979 1.19225 1.21640 0.93697 0.92175 1.50769 0.91959 1.18972 0.94125 0.92002 0.95686 1.21196 0.98225 0.90226 1.02393 1.23954 1.00280 0.95536 1.06580 1.85696 1.08607 0.91387 1.90521 1.28613 1.00613 1.00349 1.08660 1.66283 1.36023 0.98702 1.18710 1.20477 0.87494 0.97727 1.02933 1.20126 0.85863 0.83353 1.02444 1.86316 1.29440 1.25491 1.97867 1.26948 1.03813 0.95288 1.11742 1.84286 1.01359 1.05918 1.68155 0.92735 0.98173 0.98183 0.91495 0.91502 0.88669 0.88680 0.90242 0.90241 0.73703 0.78296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.08 -3.13 5.16 30.59 0.16 -2.97 16 11 C -0.11 -3.67 4.63 71.98 0.33 -3.34 16 12 S 0.00 0.12 22.31 -56.49 -1.26 -1.14 16 13 C 0.00 0.09 7.59 130.55 0.99 1.08 16 14 N -0.48 -14.22 10.59 -188.54 -2.00 -16.21 16 15 C 0.05 1.19 6.73 41.41 0.28 1.46 16 16 C 0.16 2.68 7.66 71.23 0.55 3.23 16 17 O -0.58 -7.88 12.57 -148.98 -1.87 -9.76 16 18 C -0.24 -5.55 10.54 66.71 0.70 -4.85 16 19 S 0.15 3.95 21.54 -56.49 -1.22 2.73 16 20 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 21 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 22 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 23 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.09 2.98 7.97 -2.40 -0.02 2.96 16 26 H 0.09 2.97 7.97 -2.39 -0.02 2.96 16 27 H 0.08 1.12 8.14 -2.38 -0.02 1.11 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.41 1.15 9.12 -74.05 -0.68 0.48 16 30 H 0.20 3.91 7.56 -2.91 -0.02 3.88 16 Total: -1.00 -66.21 290.53 0.29 -65.92 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: 0.48 Total: 1.06 kcal Atomic # 6 Polarization: -36.76 SS G_CDS: 3.85 Total: -32.91 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.71 Total: -71.35 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.87 Total: -9.76 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.48 Total: 1.59 kcal Total: -66.21 0.29 -65.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723370960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.358 kcal (2) G-P(sol) polarization free energy of solvation -66.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds