Wall clock time and date at job start Mon Mar 30 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00362 * 9 7 5 12 12 H 1.48503 * 109.47111 * 240.00250 * 9 7 5 13 13 S 1.81000 * 109.47293 * 120.00038 * 2 1 3 14 14 C 1.76202 * 99.99976 * 294.99983 * 13 2 1 15 15 N 1.29760 * 124.95592 * 179.97438 * 14 13 2 16 16 C 1.32096 * 116.85564 * 179.97438 * 15 14 13 17 17 C 1.50701 * 122.70285 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.46660 * 179.97438 * 17 16 15 19 19 C 1.33338 * 114.58690 * 359.97438 * 16 15 14 20 20 S 1.70967 * 124.95151 * 359.69465 * 14 13 2 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 25 25 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 26 26 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47346 * 299.97252 * 17 16 15 28 28 H 1.08998 * 109.46737 * 59.97979 * 17 16 15 29 29 H 0.96700 * 113.99935 * 179.97438 * 18 17 16 30 30 H 1.08002 * 125.94554 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.5839 -0.2929 -1.2651 11 1 6.6855 -2.4237 -2.4179 12 1 6.4872 -0.3670 -3.6873 13 16 2.1334 -0.8532 1.4778 14 6 1.5440 0.2423 2.7257 15 7 1.7176 0.0786 4.0012 16 6 1.2067 1.0015 4.7963 17 6 1.3308 0.9427 6.2970 18 8 0.6800 2.0768 6.8735 19 6 0.5732 1.9897 4.1638 20 16 0.6657 1.6795 2.4322 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7516 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 4.0608 -2.2448 -4.0348 27 1 0.8630 0.0295 6.6648 28 1 2.3848 0.9485 6.5748 29 1 0.7199 2.1044 7.8392 30 1 0.0899 2.8347 4.6316 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723393499.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:22 Heat of formation + Delta-G solvation = -17.499221 kcal Electronic energy + Delta-G solvation = -14555.612976 eV Core-core repulsion = 11989.760115 eV Total energy + Delta-G solvation = -2565.852861 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.56353 -36.77180 -34.81662 -32.25111 -30.72833 -27.72546 -27.02093 -24.61147 -23.46675 -21.03961 -19.24472 -18.55651 -17.36341 -16.46676 -16.00503 -15.50374 -15.33638 -14.63560 -14.33592 -13.94955 -13.54116 -13.14689 -12.74775 -12.44145 -12.04438 -11.75363 -11.25574 -11.03575 -10.92174 -10.74781 -10.57789 -10.53272 -9.84611 -9.70478 -9.57942 -9.26490 -9.15398 -8.78171 -8.46274 -7.04704 -6.11110 -4.13996 0.84571 1.37701 1.63119 1.97212 2.84425 3.00202 3.28490 3.36607 3.42030 3.75308 4.40001 4.90738 5.17786 5.26878 5.29484 5.34510 5.42327 5.51309 5.72328 5.80649 6.13159 6.16960 6.42148 6.49835 7.33230 7.38449 7.44247 7.79513 7.85673 8.19402 8.90902 9.51395 10.99836 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.035915 B = 0.005028 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.438186 B = 5567.179955 C = 5990.841473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 H 0.089 0.911 4 C 0.041 3.959 5 C -0.526 4.526 6 H 0.065 0.935 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.284 1.284 13 S 0.047 5.953 14 C 0.028 3.972 15 N -0.470 5.470 16 C 0.067 3.933 17 C 0.157 3.843 18 O -0.570 6.570 19 C -0.261 4.261 20 S 0.130 5.870 21 H 0.072 0.928 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.030 0.970 25 H 0.042 0.958 26 H 0.262 0.738 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.386 0.614 30 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.066 6.431 14.588 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.219 4.219 3 H 0.107 0.893 4 C 0.003 3.997 5 C -0.565 4.565 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.210 1.210 13 S 0.281 5.719 14 C -0.357 4.357 15 N -0.191 5.191 16 C -0.067 4.067 17 C 0.077 3.923 18 O -0.376 6.376 19 C -0.404 4.404 20 S 0.381 5.619 21 H 0.091 0.909 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.234 0.766 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -6.557 5.446 13.114 15.640 hybrid contribution 0.538 1.053 1.299 1.756 sum -6.019 6.499 14.412 16.917 Atomic orbital electron populations 1.22322 0.94320 1.03103 1.01803 1.24018 0.97394 1.03041 0.97423 0.89283 1.19046 0.96695 0.95712 0.88276 1.21275 0.91323 1.35197 1.08665 0.91715 1.24971 0.98661 0.94913 0.95447 1.69958 1.35704 1.35470 1.11987 0.86514 0.85450 0.77978 0.78063 1.19457 1.20870 1.20977 1.86336 1.65878 1.27316 0.92321 1.29248 1.04053 1.02687 0.99695 1.66300 1.23534 1.28490 1.00764 1.19836 0.98880 0.91646 0.96315 1.20129 0.96847 0.88322 0.87016 1.86382 1.79577 1.46159 1.25465 1.26676 1.11137 1.06478 0.96152 1.84199 1.51790 1.19960 1.05908 0.90932 0.92974 0.91232 0.95125 0.94012 0.92828 0.91576 0.91534 0.76641 0.80620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.86 37.16 0.33 -2.17 16 2 C -0.09 -1.73 2.08 -26.73 -0.06 -1.78 16 3 H 0.09 1.72 7.73 -51.92 -0.40 1.32 16 4 C 0.04 0.98 4.44 -27.88 -0.12 0.86 16 5 C -0.53 -14.05 8.53 -34.44 -0.29 -14.34 16 6 H 0.06 1.72 7.60 -52.49 -0.40 1.32 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 S 0.05 0.92 21.06 -107.50 -2.26 -1.34 16 14 C 0.03 0.52 7.38 51.89 0.38 0.90 16 15 N -0.47 -8.50 10.59 -10.94 -0.12 -8.61 16 16 C 0.07 1.04 6.74 -84.19 -0.57 0.47 16 17 C 0.16 1.78 7.66 36.01 0.28 2.05 16 18 O -0.57 -5.52 12.57 -35.23 -0.44 -5.97 16 19 C -0.26 -3.82 10.54 29.02 0.31 -3.51 16 20 S 0.13 1.99 18.69 -107.50 -2.01 -0.02 16 21 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.05 0.77 4.72 -35.65 -0.17 0.60 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.39 1.64 9.12 45.56 0.42 2.06 16 30 H 0.18 2.25 7.56 -52.49 -0.40 1.85 16 LS Contribution 282.63 15.07 4.26 4.26 Total: -1.00 -30.75 282.63 -7.32 -38.08 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -2.62 Total: -1.78 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 0.16 Total: -15.91 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.62 Total: -33.55 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.44 Total: -5.97 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -4.27 Total: -1.36 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.75 -7.32 -38.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723393499.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.577 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds