Wall clock time and date at job start Mon Mar 30 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47331 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00362 * 9 7 5 12 12 H 1.48503 * 109.47111 * 240.00250 * 9 7 5 13 13 S 1.81000 * 109.47293 * 120.00038 * 2 1 3 14 14 C 1.76202 * 99.99976 * 294.99983 * 13 2 1 15 15 N 1.29760 * 124.95592 * 179.97438 * 14 13 2 16 16 C 1.32096 * 116.85564 * 179.97438 * 15 14 13 17 17 C 1.50701 * 122.70285 * 180.02562 * 16 15 14 18 18 O 1.42901 * 109.46660 * 179.97438 * 17 16 15 19 19 C 1.33338 * 114.58690 * 359.97438 * 16 15 14 20 20 S 1.70967 * 124.95151 * 359.69465 * 14 13 2 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 25 25 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 26 26 H 0.97003 * 119.99498 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47346 * 299.97252 * 17 16 15 28 28 H 1.08998 * 109.46737 * 59.97979 * 17 16 15 29 29 H 0.96700 * 113.99935 * 179.97438 * 18 17 16 30 30 H 1.08002 * 125.94554 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 3.5764 -1.8380 -3.2994 9 14 6.0922 -1.0625 -2.4361 10 1 6.5839 -0.2929 -1.2651 11 1 6.6855 -2.4237 -2.4179 12 1 6.4872 -0.3670 -3.6873 13 16 2.1334 -0.8532 1.4778 14 6 1.5440 0.2423 2.7257 15 7 1.7176 0.0786 4.0012 16 6 1.2067 1.0015 4.7963 17 6 1.3308 0.9427 6.2970 18 8 0.6800 2.0768 6.8735 19 6 0.5732 1.9897 4.1638 20 16 0.6657 1.6795 2.4322 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.7516 -1.7716 -1.2056 25 1 1.6054 -0.2618 -2.1370 26 1 4.0608 -2.2448 -4.0348 27 1 0.8630 0.0295 6.6648 28 1 2.3848 0.9485 6.5748 29 1 0.7199 2.1044 7.8392 30 1 0.0899 2.8347 4.6316 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723393499.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:21 Heat of formation + Delta-G solvation = -39.262111 kcal Electronic energy + Delta-G solvation = -14556.556686 eV Core-core repulsion = 11989.760115 eV Total energy + Delta-G solvation = -2566.796571 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.77335 -37.56791 -36.56663 -34.17346 -31.89612 -29.52837 -28.05749 -25.85971 -25.31331 -22.61715 -20.54337 -19.70315 -18.53327 -18.32625 -17.27689 -16.75637 -16.52126 -16.45099 -15.58442 -15.13140 -14.92352 -14.58938 -14.18144 -13.90529 -13.45008 -13.31470 -12.97156 -12.68874 -12.52125 -12.42206 -12.02370 -11.62962 -11.38455 -11.35815 -11.22531 -10.69478 -10.62725 -10.50209 -10.02254 -8.51287 -8.20963 -6.29303 -0.42167 0.09275 0.21088 0.73560 1.39831 1.42493 1.52554 1.54501 1.61885 2.41621 2.87963 3.15029 3.93327 4.02012 4.03660 4.23753 4.29307 4.40292 4.49069 4.63411 4.79602 4.86445 5.01999 5.14798 5.37934 5.47239 5.76649 6.15438 6.54046 6.82820 6.88026 7.39298 8.90583 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.035915 B = 0.005028 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.438186 B = 5567.179955 C = 5990.841473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.074 4.074 3 H 0.090 0.910 4 C 0.047 3.953 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.277 1.277 13 S -0.004 6.004 14 C 0.003 3.997 15 N -0.485 5.485 16 C 0.046 3.954 17 C 0.163 3.837 18 O -0.579 6.579 19 C -0.250 4.250 20 S 0.166 5.834 21 H 0.087 0.913 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.007 0.993 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.410 0.590 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 7.961 16.248 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.204 4.204 3 H 0.108 0.892 4 C 0.009 3.991 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.188 4.188 8 N -0.568 5.568 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.202 1.202 13 S 0.230 5.770 14 C -0.381 4.381 15 N -0.206 5.206 16 C -0.088 4.088 17 C 0.083 3.917 18 O -0.389 6.389 19 C -0.393 4.393 20 S 0.417 5.583 21 H 0.105 0.895 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.026 0.974 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.262 0.738 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.908 6.991 14.805 17.771 hybrid contribution 0.566 0.676 0.936 1.286 sum -6.342 7.667 15.741 18.622 Atomic orbital electron populations 1.22281 0.91682 1.03658 1.03252 1.23764 0.99450 1.01968 0.95202 0.89193 1.18833 0.95461 0.94749 0.90076 1.21607 0.92904 1.34532 1.08279 0.91970 1.25762 1.02970 0.94793 0.95295 1.70059 1.37358 1.36627 1.12707 0.85565 0.80366 0.77960 0.78256 1.18996 1.20665 1.20234 1.86348 1.67780 1.28990 0.93866 1.28832 1.06067 1.03834 0.99413 1.66288 1.23606 1.29672 1.01075 1.20454 0.98794 0.91240 0.98265 1.20095 0.97729 0.89366 0.84558 1.86311 1.79343 1.45402 1.27838 1.27044 1.09962 1.06590 0.95674 1.83980 1.50129 1.17679 1.06476 0.89451 0.91404 0.91233 0.97426 0.95396 0.92703 0.90382 0.90619 0.73816 0.78391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 8.86 71.98 0.64 -4.02 16 2 C -0.07 -2.89 2.08 30.59 0.06 -2.82 16 3 H 0.09 3.44 7.73 -2.40 -0.02 3.42 16 4 C 0.05 2.31 4.44 29.85 0.13 2.44 16 5 C -0.53 -29.00 8.53 25.60 0.22 -28.78 16 6 H 0.06 3.34 7.60 -2.91 -0.02 3.31 16 7 C 0.01 0.58 5.46 84.65 0.46 1.04 16 8 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 9 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 S 0.00 -0.15 21.06 -56.49 -1.19 -1.34 16 14 C 0.00 0.12 7.38 130.55 0.96 1.09 16 15 N -0.49 -16.98 10.59 -188.53 -2.00 -18.97 16 16 C 0.05 1.32 6.74 41.41 0.28 1.60 16 17 C 0.16 3.23 7.66 71.24 0.55 3.77 16 18 O -0.58 -9.22 12.57 -148.98 -1.87 -11.09 16 19 C -0.25 -6.58 10.54 66.71 0.70 -5.87 16 20 S 0.17 4.74 18.69 -56.49 -1.06 3.68 16 21 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 22 H 0.07 1.89 4.72 -12.74 -0.06 1.83 16 23 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 24 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 25 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.41 2.03 9.12 -74.06 -0.68 1.35 16 30 H 0.20 4.29 7.56 -2.91 -0.02 4.27 16 Total: -1.00 -65.84 282.63 0.64 -65.20 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 0.44 Total: 2.18 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.01 Total: -31.55 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.71 Total: -72.96 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.87 Total: -11.09 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -2.25 Total: 2.34 kcal Total: -65.84 0.64 -65.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723393499.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.940 kcal (2) G-P(sol) polarization free energy of solvation -65.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds