Wall clock time and date at job start Mon Mar 30 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48503 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47089 * 299.99971 * 3 2 1 6 6 H 1.48506 * 109.46758 * 60.00061 * 3 2 1 7 7 C 1.37877 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00117 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.86573 * 59.55471 * 9 7 2 11 11 C 1.54095 * 109.87880 * 180.71961 * 9 7 2 12 12 C 1.54981 * 104.25461 * 121.59108 * 11 9 7 13 13 C 1.54996 * 102.01133 * 20.66657 * 12 11 9 14 14 H 1.08996 * 110.61765 * 81.75601 * 13 12 11 15 15 C 1.50707 * 110.61630 * 204.59764 * 13 12 11 16 16 C 1.28876 * 121.24826 * 242.79215 * 15 13 12 17 17 C 1.51425 * 117.49929 * 179.97438 * 16 15 13 18 18 S 1.83833 * 102.71422 * 343.62104 * 17 16 15 19 19 C 1.51429 * 121.25092 * 62.77464 * 15 13 12 20 20 Cl 1.80300 * 110.79488 * 77.85250 * 19 15 13 21 21 O 1.43748 * 109.87650 * 298.55112 * 9 7 2 22 22 H 0.96994 * 119.99799 * 0.02562 * 1 2 3 23 23 H 1.08998 * 110.48582 * 240.13185 * 11 9 7 24 24 H 1.09002 * 110.48987 * 2.64503 * 11 9 7 25 25 H 1.09003 * 110.84327 * 262.54107 * 12 11 9 26 26 H 1.09000 * 111.05497 * 138.88154 * 12 11 9 27 27 H 1.08007 * 121.25131 * 359.95884 * 16 15 13 28 28 H 1.09002 * 110.79526 * 101.98022 * 17 16 15 29 29 H 1.08996 * 110.79734 * 225.26328 * 17 16 15 30 30 H 1.08996 * 110.79355 * 314.56478 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6156 -2.5600 -0.8841 11 6 2.2439 -3.6775 0.0170 12 6 1.8747 -4.4686 1.2975 13 6 0.4234 -3.9935 1.5630 14 1 -0.2811 -4.5464 0.9417 15 6 0.0741 -4.1440 3.0213 16 6 -0.8693 -4.9338 3.4047 17 6 -1.1482 -5.0201 4.8906 18 16 0.3653 -4.2837 5.6298 19 6 0.8188 -3.3731 4.0910 20 17 0.2501 -1.6635 4.1610 21 8 0.4476 -2.5997 1.1872 22 1 -0.4849 0.8400 -0.0004 23 1 2.1102 -4.3022 -0.8661 24 1 3.2692 -3.3117 0.0727 25 1 2.5305 -4.1962 2.1244 26 1 1.9052 -5.5431 1.1165 27 1 -1.4397 -5.5123 2.6930 28 1 -2.0305 -4.4364 5.1532 29 1 -1.2657 -6.0578 5.2027 30 1 1.8944 -3.4148 3.9200 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725567555.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:14 Heat of formation + Delta-G solvation = -33.045512 kcal Electronic energy + Delta-G solvation = -15747.621580 eV Core-core repulsion = 13081.332213 eV Total energy + Delta-G solvation = -2666.289367 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.70901 -36.41967 -35.09092 -32.52901 -30.91635 -29.69812 -27.71246 -25.92761 -23.93692 -21.24860 -20.07414 -18.42798 -17.19864 -16.40590 -15.48119 -15.20876 -14.55546 -14.42820 -13.95534 -13.62573 -13.08253 -12.93554 -12.56143 -12.39252 -12.08755 -11.56929 -11.07229 -10.91734 -10.68744 -10.52010 -10.41392 -10.17495 -10.05404 -9.82835 -9.57110 -9.27644 -8.94237 -8.54117 -8.00770 -7.85302 -5.97541 -4.09645 1.51074 1.77032 2.01814 2.93416 3.31969 3.40605 3.42872 4.35162 4.45333 4.66035 5.04577 5.14550 5.20881 5.32952 5.46101 5.51312 5.55093 5.68799 6.03092 6.09537 6.25657 6.35785 6.59752 6.60761 6.73401 6.82668 7.52867 7.90803 8.23998 8.51622 9.01332 9.60915 11.09518 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.007746 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.185167 B = 3614.083739 C = 4198.324422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.082 3.918 3 Si 0.885 3.115 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.202 3.798 10 H 0.026 0.974 11 C -0.145 4.145 12 C -0.142 4.142 13 C 0.107 3.893 14 H 0.063 0.937 15 C -0.096 4.096 16 C -0.156 4.156 17 C -0.041 4.041 18 S -0.268 6.268 19 C 0.084 3.916 20 Cl -0.113 7.113 21 O -0.327 6.327 22 H 0.259 0.741 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.144 0.856 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -10.772 6.893 12.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.124 4.124 3 Si 0.712 3.288 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.147 3.853 10 H 0.044 0.956 11 C -0.183 4.183 12 C -0.180 4.180 13 C 0.046 3.954 14 H 0.081 0.919 15 C -0.099 4.099 16 C -0.176 4.176 17 C -0.189 4.189 18 S -0.042 6.042 19 C -0.070 4.070 20 Cl -0.086 7.086 21 O -0.246 6.246 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.161 0.839 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.792 -10.427 8.162 13.265 hybrid contribution -0.023 0.947 -1.119 1.466 sum -0.815 -9.480 7.043 11.838 Atomic orbital electron populations 1.70034 1.05896 1.26302 1.47047 1.25020 0.94697 0.99046 0.93661 0.86666 0.80331 0.84144 0.77615 1.19670 1.20984 1.20867 1.21142 0.92457 0.89922 1.53326 0.92052 1.20333 0.87305 0.92639 0.85035 0.95608 1.23097 1.02132 0.97769 0.95297 1.23111 0.96577 0.99087 0.99256 1.21726 0.95576 0.89940 0.88114 0.91930 1.21471 0.97065 0.95096 0.96239 1.22452 0.98142 1.01301 0.95672 1.23163 0.97591 1.04118 0.94005 1.88138 1.32846 1.59920 1.23263 1.25282 1.03522 0.86838 0.91343 1.98800 1.90723 1.21058 1.98019 1.89461 1.72135 1.16897 1.46105 0.93104 0.93050 0.91273 0.91568 0.91910 0.83874 0.87534 0.87066 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 12.92 55.43 0.72 -24.50 16 2 C 0.08 2.31 5.41 -17.82 -0.10 2.21 16 3 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.53 -14.58 8.78 -34.44 -0.30 -14.89 16 8 H 0.06 1.65 7.33 -52.49 -0.38 1.27 16 9 C 0.20 5.03 3.26 -27.31 -0.09 4.94 16 10 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.15 -2.86 6.64 -25.11 -0.17 -3.03 16 12 C -0.14 -2.43 6.57 -24.63 -0.16 -2.59 16 13 C 0.11 2.00 3.58 -26.83 -0.10 1.90 16 14 H 0.06 1.10 7.95 -51.93 -0.41 0.69 16 15 C -0.10 -1.59 4.58 -100.14 -0.46 -2.05 16 16 C -0.16 -2.09 9.89 -35.10 -0.35 -2.44 16 17 C -0.04 -0.48 7.45 36.36 0.27 -0.21 16 18 S -0.27 -3.90 23.19 -107.50 -2.49 -6.39 16 19 C 0.08 1.44 4.14 36.36 0.15 1.59 16 20 Cl -0.11 -2.28 28.14 -51.86 -1.46 -3.74 16 21 O -0.33 -7.99 9.59 -35.23 -0.34 -8.32 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.37 7.40 -51.93 -0.38 0.99 16 25 H 0.07 1.12 6.83 -51.93 -0.35 0.76 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.14 1.60 7.97 -52.48 -0.42 1.18 16 28 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.14 2.30 6.99 -51.93 -0.36 1.93 16 LS Contribution 278.49 15.07 4.20 4.20 Total: -1.00 -30.22 278.49 -9.26 -39.48 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -3.57 Total: -2.68 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -1.30 Total: -14.56 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.72 Total: -24.50 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.34 Total: -8.32 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -2.49 Total: -6.39 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.46 Total: -3.74 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.22 -9.26 -39.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725567555.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.432 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds