Wall clock time and date at job start Mon Mar 30 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48503 * 109.46939 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47089 * 299.99971 * 3 2 1 6 6 H 1.48506 * 109.46758 * 60.00061 * 3 2 1 7 7 C 1.37877 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99728 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00117 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.86573 * 59.55471 * 9 7 2 11 11 C 1.54095 * 109.87880 * 180.71961 * 9 7 2 12 12 C 1.54981 * 104.25461 * 121.59108 * 11 9 7 13 13 C 1.54996 * 102.01133 * 20.66657 * 12 11 9 14 14 H 1.08996 * 110.61765 * 81.75601 * 13 12 11 15 15 C 1.50707 * 110.61630 * 204.59764 * 13 12 11 16 16 C 1.28876 * 121.24826 * 242.79215 * 15 13 12 17 17 C 1.51425 * 117.49929 * 179.97438 * 16 15 13 18 18 S 1.83833 * 102.71422 * 343.62104 * 17 16 15 19 19 C 1.51429 * 121.25092 * 62.77464 * 15 13 12 20 20 Cl 1.80300 * 110.79488 * 77.85250 * 19 15 13 21 21 O 1.43748 * 109.87650 * 298.55112 * 9 7 2 22 22 H 0.96994 * 119.99799 * 0.02562 * 1 2 3 23 23 H 1.08998 * 110.48582 * 240.13185 * 11 9 7 24 24 H 1.09002 * 110.48987 * 2.64503 * 11 9 7 25 25 H 1.09003 * 110.84327 * 262.54107 * 12 11 9 26 26 H 1.09000 * 111.05497 * 138.88154 * 12 11 9 27 27 H 1.08007 * 121.25131 * 359.95884 * 16 15 13 28 28 H 1.09002 * 110.79526 * 101.98022 * 17 16 15 29 29 H 1.08996 * 110.79734 * 225.26328 * 17 16 15 30 30 H 1.08996 * 110.79355 * 314.56478 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6156 -2.5600 -0.8841 11 6 2.2439 -3.6775 0.0170 12 6 1.8747 -4.4686 1.2975 13 6 0.4234 -3.9935 1.5630 14 1 -0.2811 -4.5464 0.9417 15 6 0.0741 -4.1440 3.0213 16 6 -0.8693 -4.9338 3.4047 17 6 -1.1482 -5.0201 4.8906 18 16 0.3653 -4.2837 5.6298 19 6 0.8188 -3.3731 4.0910 20 17 0.2501 -1.6635 4.1610 21 8 0.4476 -2.5997 1.1872 22 1 -0.4849 0.8400 -0.0004 23 1 2.1102 -4.3022 -0.8661 24 1 3.2692 -3.3117 0.0727 25 1 2.5305 -4.1962 2.1244 26 1 1.9052 -5.5431 1.1165 27 1 -1.4397 -5.5123 2.6930 28 1 -2.0305 -4.4364 5.1532 29 1 -1.2657 -6.0578 5.2027 30 1 1.8944 -3.4148 3.9200 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725567555.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:14 Heat of formation + Delta-G solvation = -50.625881 kcal Electronic energy + Delta-G solvation = -15748.383922 eV Core-core repulsion = 13081.332213 eV Total energy + Delta-G solvation = -2667.051709 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21814 -37.78840 -36.45362 -34.57301 -32.52785 -31.10859 -29.18765 -27.39844 -25.58196 -22.73342 -21.75633 -19.68833 -18.83054 -17.94844 -16.99289 -16.48162 -16.36831 -15.93498 -15.67074 -14.72462 -14.65243 -14.33516 -13.91785 -13.70870 -13.63530 -13.30306 -12.88205 -12.50722 -12.24351 -12.11062 -11.91997 -11.84808 -11.67694 -11.30946 -11.04603 -10.98107 -10.65376 -10.24388 -9.81729 -8.98965 -8.09761 -6.27182 0.29657 0.56946 0.98308 1.37107 1.40365 1.50058 1.66479 2.42092 3.08309 3.23883 3.51579 3.83144 3.89089 4.08228 4.13193 4.28382 4.38065 4.49994 4.58816 4.75360 4.79616 5.03436 5.14510 5.16548 5.23738 5.52387 5.60391 5.78828 6.24271 6.60605 7.05006 7.47314 8.97367 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.007746 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.185167 B = 3614.083739 C = 4198.324422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.032 3.968 3 Si 0.944 3.056 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.287 1.287 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.197 3.803 10 H -0.009 1.009 11 C -0.139 4.139 12 C -0.130 4.130 13 C 0.101 3.899 14 H 0.074 0.926 15 C -0.135 4.135 16 C -0.120 4.120 17 C -0.037 4.037 18 S -0.268 6.268 19 C 0.085 3.915 20 Cl -0.158 7.158 21 O -0.359 6.359 22 H 0.257 0.743 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.173 0.827 28 H 0.120 0.880 29 H 0.152 0.848 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 -12.967 7.757 15.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.170 4.170 3 Si 0.769 3.231 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.214 1.214 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.141 3.859 10 H 0.009 0.991 11 C -0.177 4.177 12 C -0.167 4.167 13 C 0.041 3.959 14 H 0.092 0.908 15 C -0.138 4.138 16 C -0.140 4.140 17 C -0.183 4.183 18 S -0.042 6.042 19 C -0.069 4.069 20 Cl -0.132 7.132 21 O -0.278 6.278 22 H 0.066 0.934 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.190 0.810 28 H 0.138 0.862 29 H 0.169 0.831 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.935 -12.639 9.029 15.561 hybrid contribution -0.049 1.452 -1.335 1.973 sum -0.984 -11.187 7.695 13.613 Atomic orbital electron populations 1.70160 1.07279 1.26759 1.48775 1.25751 0.95429 1.02265 0.93580 0.85744 0.79559 0.80328 0.77454 1.18670 1.20146 1.21368 1.21541 0.92662 0.91569 1.52566 0.92259 1.20169 0.87761 0.93711 0.84304 0.99140 1.22969 1.00265 0.96591 0.97877 1.23060 0.95417 1.00784 0.97471 1.21947 0.96866 0.87192 0.89910 0.90823 1.21288 0.99863 0.97837 0.94768 1.22867 0.95380 0.98533 0.97179 1.23444 0.96246 1.06346 0.92309 1.88168 1.34673 1.59144 1.22182 1.25369 1.03255 0.84860 0.93441 1.98791 1.91032 1.25120 1.98234 1.89362 1.72140 1.20894 1.45415 0.93395 0.90999 0.91822 0.91771 0.88133 0.80966 0.86233 0.83057 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.18 12.92 21.45 0.28 -53.91 16 2 C 0.03 1.86 5.41 84.65 0.46 2.32 16 3 Si 0.94 45.15 29.54 68.60 2.03 47.18 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.55 -30.70 8.78 25.60 0.22 -30.48 16 8 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 9 C 0.20 9.98 3.26 30.22 0.10 10.08 16 10 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 11 C -0.14 -5.39 6.64 31.64 0.21 -5.18 16 12 C -0.13 -4.16 6.57 31.95 0.21 -3.95 16 13 C 0.10 3.63 3.58 30.53 0.11 3.74 16 14 H 0.07 2.44 7.95 -2.39 -0.02 2.42 16 15 C -0.14 -4.18 4.58 -14.14 -0.06 -4.24 16 16 C -0.12 -2.75 9.89 28.00 0.28 -2.47 16 17 C -0.04 -0.70 7.45 71.47 0.53 -0.16 16 18 S -0.27 -7.17 23.19 -56.49 -1.31 -8.48 16 19 C 0.08 2.83 4.14 71.47 0.30 3.12 16 20 Cl -0.16 -6.50 28.14 -2.72 -0.08 -6.57 16 21 O -0.36 -17.80 9.59 -148.98 -1.43 -19.22 16 22 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 23 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.06 2.50 7.40 -2.39 -0.02 2.48 16 25 H 0.06 2.08 6.83 -2.39 -0.02 2.06 16 26 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.17 2.95 7.97 -2.91 -0.02 2.93 16 28 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.13 4.33 6.99 -2.39 -0.02 4.32 16 Total: -1.00 -67.90 278.49 2.98 -64.92 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.14 Total: 3.32 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 2.35 Total: -27.23 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.28 Total: -53.91 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -1.43 Total: -19.22 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -1.31 Total: -8.48 kcal Atomic # 17 Polarization: -6.50 SS G_CDS: -0.08 Total: -6.57 kcal Total: -67.90 2.98 -64.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725567555.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.296 kcal (2) G-P(sol) polarization free energy of solvation -67.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds