Wall clock time and date at job start Mon Mar 30 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48501 * 109.46666 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46927 * 300.00144 * 3 2 1 6 6 H 1.48496 * 109.46848 * 60.00152 * 3 2 1 7 7 C 1.37873 * 119.99437 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00336 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.82386 * 300.89015 * 9 7 2 11 11 C 1.54390 * 109.82990 * 180.02562 * 9 7 2 12 12 C 1.55305 * 102.24977 * 219.03848 * 11 9 7 13 13 C 1.54951 * 100.94116 * 34.13496 * 12 11 9 14 14 H 1.09001 * 110.31017 * 82.57116 * 13 12 11 15 15 C 1.50706 * 110.30536 * 204.63821 * 13 12 11 16 16 C 1.28873 * 121.25172 * 245.02197 * 15 13 12 17 17 C 1.51419 * 117.50192 * 180.02562 * 16 15 13 18 18 S 1.83836 * 102.54042 * 16.28642 * 17 16 15 19 19 C 1.51425 * 121.24905 * 64.74523 * 15 13 12 20 20 Cl 1.80304 * 110.79646 * 45.44917 * 19 15 13 21 21 O 1.43235 * 109.90639 * 61.82407 * 9 7 2 22 22 H 0.97008 * 119.99721 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.84720 * 100.85212 * 11 9 7 24 24 H 1.09001 * 111.01918 * 337.30720 * 11 9 7 25 25 H 1.08998 * 111.12869 * 276.21631 * 12 11 9 26 26 H 1.08998 * 111.15743 * 152.06738 * 12 11 9 27 27 H 1.08008 * 121.24978 * 0.02584 * 16 15 13 28 28 H 1.09000 * 110.79826 * 134.54825 * 17 16 15 29 29 H 1.09004 * 110.79509 * 258.02316 * 17 16 15 30 30 H 1.08995 * 110.79873 * 281.96906 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.6105 -2.5562 0.8796 11 6 2.2467 -3.6789 -0.0005 12 6 1.5584 -4.6911 -0.9564 13 6 0.8867 -3.7295 -1.9688 14 1 1.6052 -3.4145 -2.7255 15 6 -0.2971 -4.3982 -2.6190 16 6 -0.3083 -4.6580 -3.8812 17 6 -1.5415 -5.3312 -4.4457 18 16 -2.7846 -5.0653 -3.1177 19 6 -1.5155 -4.7958 -1.8126 20 17 -2.0127 -3.4630 -0.7047 21 8 0.4558 -2.6033 -1.1874 22 1 -0.4850 0.8401 -0.0004 23 1 2.3504 -4.0991 0.9999 24 1 3.2162 -3.3722 -0.3931 25 1 0.8146 -5.2873 -0.4279 26 1 2.2925 -5.3293 -1.4484 27 1 0.5306 -4.4049 -4.5128 28 1 -1.8557 -4.8498 -5.3718 29 1 -1.3641 -6.3953 -4.6023 30 1 -1.3283 -5.7139 -1.2557 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725567556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:17 Heat of formation + Delta-G solvation = -26.936727 kcal Electronic energy + Delta-G solvation = -15793.418506 eV Core-core repulsion = 13127.394036 eV Total energy + Delta-G solvation = -2666.024470 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.68837 -36.32691 -35.12204 -32.48021 -30.88374 -29.62071 -27.70695 -25.91633 -23.90767 -21.04763 -20.21793 -18.42819 -16.99183 -16.42316 -15.42881 -15.27438 -14.85644 -14.43014 -13.72109 -13.55330 -13.13750 -12.72037 -12.55206 -12.14084 -12.08036 -11.70092 -10.92183 -10.76135 -10.63071 -10.58917 -10.43929 -10.21132 -10.11056 -9.82255 -9.50764 -9.20195 -8.86601 -8.47126 -7.80285 -7.71725 -5.91644 -4.06049 1.52390 1.86557 2.17662 2.83890 3.32559 3.40910 3.43376 4.38522 4.47148 4.69547 5.02074 5.15389 5.20368 5.28866 5.44969 5.52272 5.53507 5.71846 6.08757 6.17625 6.27534 6.37279 6.55081 6.66800 6.76059 6.83271 7.70047 7.93861 8.33755 8.63068 9.08989 9.65060 11.13393 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.028969 B = 0.007072 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.331971 B = 3958.536484 C = 4232.439668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.081 3.919 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.208 3.792 10 H 0.040 0.960 11 C -0.144 4.144 12 C -0.148 4.148 13 C 0.119 3.881 14 H 0.065 0.935 15 C -0.104 4.104 16 C -0.163 4.163 17 C -0.042 4.042 18 S -0.267 6.267 19 C 0.065 3.935 20 Cl -0.072 7.072 21 O -0.328 6.328 22 H 0.258 0.742 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.142 0.858 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 -11.968 -6.162 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.125 4.125 3 Si 0.712 3.288 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.585 4.585 8 H 0.075 0.925 9 C 0.153 3.847 10 H 0.057 0.943 11 C -0.182 4.182 12 C -0.186 4.186 13 C 0.058 3.942 14 H 0.083 0.917 15 C -0.106 4.106 16 C -0.183 4.183 17 C -0.189 4.189 18 S -0.041 6.041 19 C -0.089 4.089 20 Cl -0.045 7.045 21 O -0.247 6.247 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.160 0.840 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.705 -11.622 -6.094 13.398 hybrid contribution 1.818 0.835 0.004 2.001 sum -0.887 -10.787 -6.089 12.418 Atomic orbital electron populations 1.70059 1.05747 1.26114 1.46933 1.25027 0.94691 0.98911 0.93867 0.86689 0.80231 0.84313 0.77558 1.19848 1.21002 1.21041 1.21396 0.92579 0.90842 1.53666 0.92465 1.20258 0.87626 0.91543 0.85255 0.94262 1.23228 1.00513 0.96468 0.98002 1.23236 0.99449 0.98060 0.97831 1.21513 0.89757 0.88372 0.94511 0.91745 1.21792 0.96316 0.98334 0.94185 1.22382 0.99458 1.01029 0.95391 1.23139 0.92853 1.03509 0.99436 1.88167 1.15501 1.93411 1.07047 1.25202 0.92415 0.96378 0.94931 1.98847 1.91294 1.50115 1.64235 1.88989 1.57899 1.42856 1.35005 0.93190 0.92240 0.91588 0.91724 0.91730 0.84016 0.87237 0.87937 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.13 12.93 55.43 0.72 -24.41 16 2 C 0.08 2.29 5.41 -17.82 -0.10 2.20 16 3 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.55 -15.08 8.75 -34.44 -0.30 -15.38 16 8 H 0.06 1.55 7.52 -52.48 -0.39 1.15 16 9 C 0.21 5.17 3.35 -27.15 -0.09 5.08 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 11 C -0.14 -2.85 6.52 -24.78 -0.16 -3.01 16 12 C -0.15 -2.48 6.54 -24.48 -0.16 -2.64 16 13 C 0.12 2.26 3.67 -26.85 -0.10 2.16 16 14 H 0.06 1.21 7.94 -51.93 -0.41 0.80 16 15 C -0.10 -1.71 4.85 -100.14 -0.49 -2.19 16 16 C -0.16 -2.20 9.89 -35.10 -0.35 -2.55 16 17 C -0.04 -0.48 7.46 36.36 0.27 -0.21 16 18 S -0.27 -4.04 23.14 -107.50 -2.49 -6.53 16 19 C 0.07 1.07 3.99 36.36 0.15 1.21 16 20 Cl -0.07 -1.48 26.19 -51.86 -1.36 -2.83 16 21 O -0.33 -7.98 7.53 -35.23 -0.27 -8.25 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.07 1.30 7.67 -51.93 -0.40 0.90 16 25 H 0.06 1.03 7.52 -51.93 -0.39 0.64 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.14 1.66 7.96 -52.48 -0.42 1.24 16 28 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.13 1.81 7.97 -51.93 -0.41 1.39 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -30.47 276.69 -9.25 -39.72 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.68 Total: -2.96 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -1.33 Total: -15.32 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.72 Total: -24.41 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.27 Total: -8.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -4.04 SS G_CDS: -2.49 Total: -6.53 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -1.36 Total: -2.83 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.47 -9.25 -39.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725567556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.781 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds