Wall clock time and date at job start Mon Mar 30 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00214 * 2 1 4 4 H 1.48501 * 109.46666 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46927 * 300.00144 * 3 2 1 6 6 H 1.48496 * 109.46848 * 60.00152 * 3 2 1 7 7 C 1.37873 * 119.99437 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00336 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.82386 * 300.89015 * 9 7 2 11 11 C 1.54390 * 109.82990 * 180.02562 * 9 7 2 12 12 C 1.55305 * 102.24977 * 219.03848 * 11 9 7 13 13 C 1.54951 * 100.94116 * 34.13496 * 12 11 9 14 14 H 1.09001 * 110.31017 * 82.57116 * 13 12 11 15 15 C 1.50706 * 110.30536 * 204.63821 * 13 12 11 16 16 C 1.28873 * 121.25172 * 245.02197 * 15 13 12 17 17 C 1.51419 * 117.50192 * 180.02562 * 16 15 13 18 18 S 1.83836 * 102.54042 * 16.28642 * 17 16 15 19 19 C 1.51425 * 121.24905 * 64.74523 * 15 13 12 20 20 Cl 1.80304 * 110.79646 * 45.44917 * 19 15 13 21 21 O 1.43235 * 109.90639 * 61.82407 * 9 7 2 22 22 H 0.97008 * 119.99721 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.84720 * 100.85212 * 11 9 7 24 24 H 1.09001 * 111.01918 * 337.30720 * 11 9 7 25 25 H 1.08998 * 111.12869 * 276.21631 * 12 11 9 26 26 H 1.08998 * 111.15743 * 152.06738 * 12 11 9 27 27 H 1.08008 * 121.24978 * 0.02584 * 16 15 13 28 28 H 1.09000 * 110.79826 * 134.54825 * 17 16 15 29 29 H 1.09004 * 110.79509 * 258.02316 * 17 16 15 30 30 H 1.08995 * 110.79873 * 281.96906 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.6105 -2.5562 0.8796 11 6 2.2467 -3.6789 -0.0005 12 6 1.5584 -4.6911 -0.9564 13 6 0.8867 -3.7295 -1.9688 14 1 1.6052 -3.4145 -2.7255 15 6 -0.2971 -4.3982 -2.6190 16 6 -0.3083 -4.6580 -3.8812 17 6 -1.5415 -5.3312 -4.4457 18 16 -2.7846 -5.0653 -3.1177 19 6 -1.5155 -4.7958 -1.8126 20 17 -2.0127 -3.4630 -0.7047 21 8 0.4558 -2.6033 -1.1874 22 1 -0.4850 0.8401 -0.0004 23 1 2.3504 -4.0991 0.9999 24 1 3.2162 -3.3722 -0.3931 25 1 0.8146 -5.2873 -0.4279 26 1 2.2925 -5.3293 -1.4484 27 1 0.5306 -4.4049 -4.5128 28 1 -1.8557 -4.8498 -5.3718 29 1 -1.3641 -6.3953 -4.6023 30 1 -1.3283 -5.7139 -1.2557 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725567556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:16 Heat of formation + Delta-G solvation = -44.542818 kcal Electronic energy + Delta-G solvation = -15794.181963 eV Core-core repulsion = 13127.394036 eV Total energy + Delta-G solvation = -2666.787928 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19258 -37.69455 -36.48332 -34.52460 -32.48593 -31.03495 -29.14577 -27.41373 -25.52095 -22.49508 -21.94636 -19.67251 -18.51694 -18.14804 -16.91951 -16.68099 -16.37693 -16.08095 -15.21282 -14.69642 -14.48472 -14.44804 -13.78558 -13.68100 -13.48819 -13.40134 -12.83057 -12.41166 -12.29025 -12.11066 -11.88503 -11.78808 -11.59994 -11.28396 -11.10923 -10.98093 -10.58736 -10.07280 -9.57572 -8.92808 -8.02619 -6.23909 0.32279 0.76639 1.01853 1.40014 1.41759 1.52644 1.61413 2.44732 3.12934 3.27051 3.54826 3.78844 3.92184 4.02304 4.16121 4.33954 4.41615 4.52810 4.72643 4.74520 4.81184 5.00203 5.15943 5.17587 5.27673 5.54154 5.71226 5.86913 6.29495 6.70945 7.17792 7.52381 9.01413 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.028969 B = 0.007072 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.331971 B = 3958.536484 C = 4232.439668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.028 3.972 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.563 4.563 8 H 0.057 0.943 9 C 0.207 3.793 10 H -0.001 1.001 11 C -0.140 4.140 12 C -0.131 4.131 13 C 0.109 3.891 14 H 0.065 0.935 15 C -0.141 4.141 16 C -0.130 4.130 17 C -0.028 4.028 18 S -0.299 6.299 19 C 0.073 3.927 20 Cl -0.123 7.123 21 O -0.356 6.356 22 H 0.255 0.745 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.167 0.833 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 -13.516 -8.248 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.174 4.174 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.601 4.601 8 H 0.075 0.925 9 C 0.151 3.849 10 H 0.016 0.984 11 C -0.178 4.178 12 C -0.169 4.169 13 C 0.050 3.950 14 H 0.083 0.917 15 C -0.143 4.143 16 C -0.150 4.150 17 C -0.175 4.175 18 S -0.073 6.073 19 C -0.081 4.081 20 Cl -0.096 7.096 21 O -0.275 6.275 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.184 0.816 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.505 -13.187 -8.187 15.595 hybrid contribution 1.455 1.207 0.508 1.957 sum -0.051 -11.980 -7.679 14.230 Atomic orbital electron populations 1.70221 1.07229 1.26526 1.48540 1.25817 0.95465 1.02371 0.93787 0.85673 0.79343 0.80146 0.77354 1.18794 1.21065 1.20719 1.21836 0.92831 0.92482 1.52974 0.92486 1.20011 0.87764 0.92603 0.84534 0.98368 1.23110 0.99355 0.95592 0.99733 1.23164 0.99857 0.97287 0.96564 1.21704 0.91217 0.87607 0.94516 0.91720 1.21582 0.95951 1.01538 0.95276 1.22765 1.00318 0.97598 0.94317 1.23399 0.90008 1.05811 0.98296 1.88313 1.17078 1.93287 1.08633 1.25374 0.92916 0.95094 0.94679 1.98842 1.91799 1.52700 1.66246 1.88901 1.58134 1.45515 1.34980 0.93600 0.91118 0.91504 0.91069 0.88136 0.81601 0.84924 0.84279 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.12 12.93 21.45 0.28 -53.85 16 2 C 0.03 1.62 5.41 84.65 0.46 2.08 16 3 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.56 -31.63 8.75 25.60 0.22 -31.41 16 8 H 0.06 3.10 7.52 -2.91 -0.02 3.08 16 9 C 0.21 10.52 3.35 30.32 0.10 10.62 16 10 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 11 C -0.14 -5.44 6.52 31.86 0.21 -5.23 16 12 C -0.13 -4.11 6.54 32.05 0.21 -3.90 16 13 C 0.11 4.01 3.67 30.52 0.11 4.12 16 14 H 0.07 2.32 7.94 -2.39 -0.02 2.30 16 15 C -0.14 -4.32 4.85 -14.13 -0.07 -4.39 16 16 C -0.13 -3.00 9.89 28.00 0.28 -2.73 16 17 C -0.03 -0.53 7.46 71.46 0.53 0.01 16 18 S -0.30 -8.45 23.14 -56.49 -1.31 -9.76 16 19 C 0.07 2.33 3.99 71.47 0.29 2.62 16 20 Cl -0.12 -5.18 26.19 -2.72 -0.07 -5.25 16 21 O -0.36 -17.58 7.53 -148.98 -1.12 -18.70 16 22 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 23 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.07 2.55 7.67 -2.39 -0.02 2.53 16 25 H 0.07 2.13 7.52 -2.39 -0.02 2.11 16 26 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.17 3.06 7.96 -2.91 -0.02 3.03 16 28 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.14 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.14 3.88 7.97 -2.39 -0.02 3.86 16 Total: -1.00 -68.79 276.69 3.28 -65.52 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.13 Total: 3.47 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 2.34 Total: -28.20 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.28 Total: -53.85 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.12 Total: -18.70 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.31 Total: -9.76 kcal Atomic # 17 Polarization: -5.18 SS G_CDS: -0.07 Total: -5.25 kcal Total: -68.79 3.28 -65.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725567556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.973 kcal (2) G-P(sol) polarization free energy of solvation -68.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds