Wall clock time and date at job start Mon Mar 30 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48500 * 109.47415 * 270.00042 * 3 2 1 5 5 H 1.48499 * 109.46888 * 30.00075 * 3 2 1 6 6 H 1.48496 * 109.47222 * 149.99929 * 3 2 1 7 7 C 1.37882 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00140 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99560 * 180.02562 * 7 2 1 10 10 H 1.09002 * 110.55124 * 302.87487 * 9 7 2 11 11 C 1.55001 * 110.61565 * 179.97438 * 9 7 2 12 12 C 1.54811 * 102.09189 * 204.31634 * 11 9 7 13 13 C 1.54101 * 104.18863 * 20.88095 * 12 11 9 14 14 H 1.08994 * 109.87858 * 242.45810 * 13 12 11 15 15 C 1.50698 * 109.87696 * 121.45104 * 13 12 11 16 16 C 1.28876 * 121.24777 * 114.97350 * 15 13 12 17 17 C 1.51426 * 117.49923 * 179.97438 * 16 15 13 18 18 S 1.83840 * 102.54220 * 343.71743 * 17 16 15 19 19 C 1.51429 * 121.25491 * 294.95691 * 15 13 12 20 20 Cl 1.80304 * 110.78988 * 314.56840 * 19 15 13 21 21 O 1.43742 * 107.29218 * 2.02907 * 13 12 11 22 22 H 0.97000 * 120.00086 * 0.02562 * 1 2 3 23 23 H 1.09005 * 110.90551 * 86.11994 * 11 9 7 24 24 H 1.08997 * 110.93779 * 322.53081 * 11 9 7 25 25 H 1.09000 * 110.48374 * 262.20628 * 12 11 9 26 26 H 1.08997 * 110.48845 * 139.55867 * 12 11 9 27 27 H 1.07997 * 121.25181 * 359.96186 * 16 15 13 28 28 H 1.08999 * 110.79885 * 225.45642 * 17 16 15 29 29 H 1.08993 * 110.79432 * 101.97756 * 17 16 15 30 30 H 1.08996 * 110.79418 * 78.04200 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8944 -0.6395 -0.8566 11 6 4.0573 -2.6448 -0.0001 12 6 5.4624 -2.4627 0.6239 13 6 5.3685 -1.1243 1.3819 14 1 6.0708 -0.4075 0.9566 15 6 5.6766 -1.3393 2.8413 16 6 6.7166 -0.8116 3.3898 17 6 6.9440 -1.0827 4.8621 18 16 5.3025 -1.7010 5.4124 19 6 4.7757 -2.1831 3.7184 20 17 3.0430 -1.7667 3.4442 21 8 4.0227 -0.6420 1.2323 22 1 -0.4850 0.8400 -0.0004 23 1 4.1302 -3.0329 -1.0161 24 1 3.4380 -3.2940 0.6188 25 1 6.2217 -2.4070 -0.1561 26 1 5.6819 -3.2774 1.3139 27 1 7.4003 -0.1993 2.8207 28 1 7.2082 -0.1654 5.3883 29 1 7.7109 -1.8445 5.0014 30 1 4.9517 -3.2448 3.5458 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725567557.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:19 Heat of formation + Delta-G solvation = -23.226977 kcal Electronic energy + Delta-G solvation = -15959.898472 eV Core-core repulsion = 13294.034869 eV Total energy + Delta-G solvation = -2665.863604 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.00347 -36.47380 -35.17394 -32.52807 -31.18816 -29.89510 -28.00619 -26.13573 -23.89581 -21.16356 -20.24466 -18.53819 -17.23214 -16.63628 -15.66702 -15.38072 -15.06896 -14.29954 -13.94486 -13.73500 -13.13449 -12.90805 -12.61733 -12.54967 -12.38534 -11.83078 -11.07449 -10.92151 -10.80882 -10.66152 -10.28073 -10.10611 -9.86209 -9.80715 -9.52852 -9.44799 -9.01967 -8.53855 -8.26812 -7.83104 -6.07471 -4.13899 1.44865 1.75514 2.10135 2.77685 3.38878 3.47167 3.68413 4.26446 4.54494 4.55863 4.90966 5.03902 5.11469 5.18808 5.28380 5.38278 5.41933 5.53307 5.91210 5.97136 6.09340 6.20853 6.38422 6.51363 6.60607 6.66040 7.13686 7.63537 8.19563 8.48265 8.95131 9.56682 11.03253 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.008457 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.921442 B = 3310.240141 C = 3494.032475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.086 3.914 3 Si 0.867 3.133 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.230 1.230 7 C -0.505 4.505 8 H 0.078 0.922 9 C 0.171 3.829 10 H 0.024 0.976 11 C -0.133 4.133 12 C -0.148 4.148 13 C 0.112 3.888 14 H 0.062 0.938 15 C -0.106 4.106 16 C -0.161 4.161 17 C -0.043 4.043 18 S -0.265 6.265 19 C 0.062 3.938 20 Cl -0.066 7.066 21 O -0.347 6.347 22 H 0.264 0.736 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.142 0.858 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.302 -3.681 6.170 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.119 4.119 3 Si 0.693 3.307 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.153 1.153 7 C -0.542 4.542 8 H 0.096 0.904 9 C 0.116 3.884 10 H 0.042 0.958 11 C -0.170 4.170 12 C -0.186 4.186 13 C 0.052 3.948 14 H 0.080 0.920 15 C -0.108 4.108 16 C -0.181 4.181 17 C -0.191 4.191 18 S -0.039 6.039 19 C -0.092 4.092 20 Cl -0.038 7.038 21 O -0.267 6.267 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.159 0.841 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.333 -3.491 7.442 16.522 hybrid contribution 0.945 0.837 -1.164 1.717 sum 15.277 -2.654 6.278 16.729 Atomic orbital electron populations 1.69912 1.06626 1.27297 1.49060 1.25009 0.94588 0.99544 0.92727 0.87003 0.82802 0.82873 0.77976 1.21240 1.21784 1.15298 1.20805 0.87172 0.94606 1.51583 0.90400 1.21114 0.95514 0.88192 0.83584 0.95849 1.23009 0.93556 1.00550 0.99921 1.22953 0.99388 0.96955 0.99262 1.21342 0.90422 0.94908 0.88139 0.92012 1.21727 0.94466 0.97018 0.97616 1.22404 0.99462 1.01203 0.94990 1.23140 0.95979 1.04440 0.95532 1.88209 1.19575 1.82367 1.13735 1.25167 0.89984 1.02295 0.91762 1.98865 1.14766 1.94548 1.95647 1.89478 1.22184 1.70669 1.44398 0.92604 0.91839 0.90937 0.91510 0.91900 0.84077 0.87200 0.87833 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.96 55.43 0.77 -26.56 16 2 C 0.09 2.47 5.47 -17.82 -0.10 2.38 16 3 Si 0.87 22.02 27.06 -169.99 -4.60 17.42 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.23 -5.68 5.62 56.52 0.32 -5.36 16 7 C -0.50 -13.91 9.40 -34.44 -0.32 -14.23 16 8 H 0.08 2.32 8.01 -52.49 -0.42 1.90 16 9 C 0.17 3.92 2.51 -26.83 -0.07 3.85 16 10 H 0.02 0.55 7.46 -51.93 -0.39 0.16 16 11 C -0.13 -2.48 6.55 -24.72 -0.16 -2.64 16 12 C -0.15 -2.26 6.54 -25.20 -0.16 -2.42 16 13 C 0.11 1.93 3.65 -27.31 -0.10 1.83 16 14 H 0.06 0.99 7.91 -51.93 -0.41 0.58 16 15 C -0.11 -1.62 4.60 -100.14 -0.46 -2.08 16 16 C -0.16 -1.99 9.88 -35.10 -0.35 -2.34 16 17 C -0.04 -0.47 7.46 36.36 0.27 -0.19 16 18 S -0.26 -3.87 23.13 -107.50 -2.49 -6.36 16 19 C 0.06 0.99 4.14 36.36 0.15 1.14 16 20 Cl -0.07 -1.34 26.23 -51.86 -1.36 -2.70 16 21 O -0.35 -7.71 5.77 -35.23 -0.20 -7.92 16 22 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.43 8.05 -51.93 -0.42 1.01 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.86 7.39 -51.93 -0.38 0.48 16 27 H 0.14 1.46 7.95 -52.49 -0.42 1.04 16 28 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.13 1.80 7.98 -51.93 -0.41 1.38 16 LS Contribution 271.83 15.07 4.10 4.10 Total: -1.00 -31.00 271.83 -8.84 -39.85 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -3.76 Total: -3.11 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -1.30 Total: -14.72 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.77 Total: -26.56 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.20 Total: -7.92 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.60 Total: 17.42 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.49 Total: -6.36 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.36 Total: -2.70 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.00 -8.84 -39.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725567557.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.620 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds