Wall clock time and date at job start Mon Mar 30 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48501 * 109.46933 * 270.00303 * 3 2 1 5 5 H 1.48497 * 109.46837 * 29.99700 * 3 2 1 6 6 H 1.48500 * 109.47366 * 149.99943 * 3 2 1 7 7 C 1.37876 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00341 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.82252 * 300.88555 * 9 7 2 11 11 C 1.54378 * 109.83093 * 179.97438 * 9 7 2 12 12 C 1.55307 * 102.25419 * 219.03646 * 11 9 7 13 13 C 1.54941 * 100.94052 * 34.13841 * 12 11 9 14 14 H 1.09002 * 110.31244 * 82.46869 * 13 12 11 15 15 C 1.53000 * 110.30657 * 204.53993 * 13 12 11 16 16 H 1.08998 * 110.70385 * 296.72555 * 15 13 12 17 17 C 1.51428 * 110.79246 * 173.18110 * 15 13 12 18 18 C 1.28875 * 117.49893 * 258.02236 * 17 15 13 19 19 C 1.51417 * 117.49983 * 0.02562 * 18 17 15 20 20 Cl 1.80300 * 110.79623 * 225.45392 * 19 18 17 21 21 S 1.83833 * 110.79613 * 60.06297 * 15 13 12 22 22 O 1.43470 * 109.89839 * 61.78229 * 9 7 2 23 23 H 0.96995 * 120.00271 * 0.02562 * 1 2 3 24 24 H 1.09009 * 110.84604 * 100.84903 * 11 9 7 25 25 H 1.08997 * 111.02628 * 337.31518 * 11 9 7 26 26 H 1.08998 * 111.12841 * 276.21293 * 12 11 9 27 27 H 1.09006 * 111.15507 * 152.06814 * 12 11 9 28 28 H 1.08003 * 121.25195 * 78.00470 * 17 15 13 29 29 H 1.08004 * 121.24819 * 180.02562 * 18 17 15 30 30 H 1.08997 * 110.96393 * 102.05589 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8815 -0.6669 -0.8795 11 6 4.0354 -2.6461 -0.0001 12 6 5.2558 -2.5564 0.9563 13 6 4.7585 -1.4942 1.9687 14 1 4.1247 -1.9589 2.7241 15 6 5.9471 -0.7948 2.6312 16 1 6.5370 -1.5041 3.2117 17 6 5.4793 0.3566 3.4964 18 6 5.6018 1.5475 3.0193 19 6 6.2020 1.6883 1.6363 20 17 7.4349 3.0035 1.6044 21 16 6.9912 0.0485 1.3750 22 8 3.9994 -0.5568 1.1894 23 1 -0.4850 0.8400 -0.0004 24 1 4.3477 -2.9457 -1.0005 25 1 3.2849 -3.3326 0.3919 26 1 6.1442 -2.2103 0.4281 27 1 5.4412 -3.5114 1.4481 28 1 5.0585 0.1862 4.4764 29 1 5.2882 2.4126 3.5848 30 1 5.4270 1.8685 0.8914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725590557.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:25 Heat of formation + Delta-G solvation = -27.405601 kcal Electronic energy + Delta-G solvation = -15965.028853 eV Core-core repulsion = 13298.984050 eV Total energy + Delta-G solvation = -2666.044802 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.81519 -36.66705 -35.53008 -32.63033 -31.36257 -30.48398 -27.55876 -25.76514 -23.41169 -20.88817 -20.24805 -18.93946 -17.20199 -16.81821 -16.06700 -15.42342 -15.09501 -14.63967 -14.10542 -13.32562 -12.90056 -12.70956 -12.63329 -12.38149 -12.25132 -12.16635 -11.11759 -10.83936 -10.74845 -10.70888 -10.50961 -10.35379 -10.17097 -9.94450 -9.74330 -9.36518 -9.18498 -8.58155 -8.20954 -7.61596 -6.12085 -4.19892 1.42470 1.92959 2.09608 2.60877 3.34617 3.39861 3.56560 4.33637 4.47764 4.55968 4.80491 5.12433 5.27717 5.35498 5.37717 5.44541 5.59445 5.66772 6.03449 6.11632 6.18202 6.27096 6.39558 6.51105 6.54046 6.69387 7.26136 7.62853 8.16742 8.43690 8.89911 9.53086 10.98862 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.009822 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.067078 B = 2850.086008 C = 3644.523907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.084 3.916 3 Si 0.871 3.129 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.223 1.223 7 C -0.532 4.532 8 H 0.074 0.926 9 C 0.173 3.827 10 H 0.038 0.962 11 C -0.130 4.130 12 C -0.153 4.153 13 C 0.090 3.910 14 H 0.074 0.926 15 C -0.018 4.018 16 H 0.120 0.880 17 C -0.120 4.120 18 C -0.161 4.161 19 C 0.071 3.929 20 Cl -0.155 7.155 21 S -0.231 6.231 22 O -0.369 6.369 23 H 0.264 0.736 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.149 0.427 6.213 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.120 4.120 3 Si 0.699 3.301 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.147 1.147 7 C -0.569 4.569 8 H 0.092 0.908 9 C 0.118 3.882 10 H 0.056 0.944 11 C -0.168 4.168 12 C -0.191 4.191 13 C 0.030 3.970 14 H 0.092 0.908 15 C -0.147 4.147 16 H 0.138 0.862 17 C -0.139 4.139 18 C -0.181 4.181 19 C -0.083 4.083 20 Cl -0.129 7.129 21 S -0.004 6.004 22 O -0.289 6.289 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 13.980 0.461 5.484 15.024 hybrid contribution -0.704 1.152 0.688 1.515 sum 13.275 1.613 6.172 14.728 Atomic orbital electron populations 1.69934 1.06718 1.27304 1.49298 1.25028 0.94559 0.99744 0.92681 0.86993 0.82418 0.82518 0.78205 1.21151 1.21943 1.14668 1.21325 0.88751 0.94589 1.52272 0.90798 1.20692 0.94496 0.88643 0.84350 0.94431 1.22960 0.95680 0.99625 0.98526 1.23341 0.99604 0.98280 0.97866 1.22665 0.89923 0.89812 0.94593 0.90846 1.23543 0.97473 0.98474 0.95193 0.86229 1.22567 0.99080 0.92668 0.99620 1.22594 1.01953 0.99289 0.94243 1.25747 0.92309 0.89149 1.01050 1.98722 1.60487 1.54511 1.99141 1.87843 1.49940 1.05474 1.57168 1.88847 1.69068 1.35107 1.35903 0.92654 0.91834 0.91102 0.90357 0.91502 0.84081 0.84157 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 2 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 3 Si 0.87 21.29 27.01 -169.99 -4.59 16.69 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.22 -5.03 3.66 56.52 0.21 -4.82 16 7 C -0.53 -14.63 9.33 -34.44 -0.32 -14.96 16 8 H 0.07 2.19 7.77 -52.49 -0.41 1.79 16 9 C 0.17 3.94 2.82 -27.16 -0.08 3.86 16 10 H 0.04 0.89 7.53 -51.93 -0.39 0.50 16 11 C -0.13 -2.44 6.52 -24.79 -0.16 -2.60 16 12 C -0.15 -2.40 6.47 -24.48 -0.16 -2.56 16 13 C 0.09 1.52 3.28 -25.71 -0.08 1.44 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 15 C -0.02 -0.26 3.34 -27.53 -0.09 -0.35 16 16 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 17 C -0.12 -1.63 9.27 -35.10 -0.33 -1.96 16 18 C -0.16 -2.32 9.73 -35.11 -0.34 -2.67 16 19 C 0.07 1.13 4.29 36.36 0.16 1.29 16 20 Cl -0.16 -2.26 28.79 -51.86 -1.49 -3.76 16 21 S -0.23 -3.64 20.79 -107.50 -2.23 -5.87 16 22 O -0.37 -7.79 6.75 -35.23 -0.24 -8.03 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 24 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 25 H 0.07 1.36 7.67 -51.93 -0.40 0.97 16 26 H 0.08 1.22 6.73 -51.93 -0.35 0.87 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 29 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 30 H 0.15 2.59 6.40 -51.93 -0.33 2.26 16 LS Contribution 268.80 15.07 4.05 4.05 Total: -1.00 -29.86 268.80 -8.98 -38.84 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.75 Total: 0.70 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -1.50 Total: -16.22 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.41 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.24 Total: -8.03 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.69 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -2.23 Total: -5.87 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.49 Total: -3.76 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.86 -8.98 -38.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725590557.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.437 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds