Wall clock time and date at job start Mon Mar 30 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48501 * 109.46933 * 270.00303 * 3 2 1 5 5 H 1.48497 * 109.46837 * 29.99700 * 3 2 1 6 6 H 1.48500 * 109.47366 * 149.99943 * 3 2 1 7 7 C 1.37876 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00341 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.82252 * 300.88555 * 9 7 2 11 11 C 1.54378 * 109.83093 * 179.97438 * 9 7 2 12 12 C 1.55307 * 102.25419 * 219.03646 * 11 9 7 13 13 C 1.54941 * 100.94052 * 34.13841 * 12 11 9 14 14 H 1.09002 * 110.31244 * 82.46869 * 13 12 11 15 15 C 1.53000 * 110.30657 * 204.53993 * 13 12 11 16 16 H 1.08998 * 110.70385 * 296.72555 * 15 13 12 17 17 C 1.51428 * 110.79246 * 173.18110 * 15 13 12 18 18 C 1.28875 * 117.49893 * 258.02236 * 17 15 13 19 19 C 1.51417 * 117.49983 * 0.02562 * 18 17 15 20 20 Cl 1.80300 * 110.79623 * 225.45392 * 19 18 17 21 21 S 1.83833 * 110.79613 * 60.06297 * 15 13 12 22 22 O 1.43470 * 109.89839 * 61.78229 * 9 7 2 23 23 H 0.96995 * 120.00271 * 0.02562 * 1 2 3 24 24 H 1.09009 * 110.84604 * 100.84903 * 11 9 7 25 25 H 1.08997 * 111.02628 * 337.31518 * 11 9 7 26 26 H 1.08998 * 111.12841 * 276.21293 * 12 11 9 27 27 H 1.09006 * 111.15507 * 152.06814 * 12 11 9 28 28 H 1.08003 * 121.25195 * 78.00470 * 17 15 13 29 29 H 1.08004 * 121.24819 * 180.02562 * 18 17 15 30 30 H 1.08997 * 110.96393 * 102.05589 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8815 -0.6669 -0.8795 11 6 4.0354 -2.6461 -0.0001 12 6 5.2558 -2.5564 0.9563 13 6 4.7585 -1.4942 1.9687 14 1 4.1247 -1.9589 2.7241 15 6 5.9471 -0.7948 2.6312 16 1 6.5370 -1.5041 3.2117 17 6 5.4793 0.3566 3.4964 18 6 5.6018 1.5475 3.0193 19 6 6.2020 1.6883 1.6363 20 17 7.4349 3.0035 1.6044 21 16 6.9912 0.0485 1.3750 22 8 3.9994 -0.5568 1.1894 23 1 -0.4850 0.8400 -0.0004 24 1 4.3477 -2.9457 -1.0005 25 1 3.2849 -3.3326 0.3919 26 1 6.1442 -2.2103 0.4281 27 1 5.4412 -3.5114 1.4481 28 1 5.0585 0.1862 4.4764 29 1 5.2882 2.4126 3.5848 30 1 5.4270 1.8685 0.8914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725590557.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:24 Heat of formation + Delta-G solvation = -44.747010 kcal Electronic energy + Delta-G solvation = -15965.780833 eV Core-core repulsion = 13298.984050 eV Total energy + Delta-G solvation = -2666.796782 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.29227 -37.84290 -36.70025 -34.69680 -32.84185 -32.01590 -29.08441 -27.15095 -24.97660 -22.25999 -21.93646 -20.05034 -18.89696 -18.37350 -17.49741 -16.94935 -16.29790 -16.01182 -15.88629 -14.73671 -14.62170 -14.17769 -13.99745 -13.91119 -13.60233 -13.38436 -12.86841 -12.58022 -12.26837 -12.01650 -11.78397 -11.71303 -11.56812 -11.53226 -11.26151 -11.17008 -10.70419 -10.34817 -9.91896 -8.81775 -8.31698 -6.43092 0.27636 0.82360 0.94069 1.37589 1.38400 1.49418 1.65180 2.42374 2.92205 3.23853 3.42065 3.71839 3.84898 4.02886 4.08976 4.26432 4.37537 4.56190 4.61663 4.67169 4.84144 5.01343 5.12744 5.22385 5.24946 5.46723 5.57272 5.61197 6.19316 6.53239 6.75646 7.34465 8.82644 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.009822 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.067078 B = 2850.086008 C = 3644.523907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.026 3.974 3 Si 0.931 3.069 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.196 1.196 7 C -0.535 4.535 8 H 0.036 0.964 9 C 0.177 3.823 10 H 0.030 0.970 11 C -0.130 4.130 12 C -0.137 4.137 13 C 0.080 3.920 14 H 0.079 0.921 15 C -0.009 4.009 16 H 0.155 0.845 17 C -0.119 4.119 18 C -0.177 4.177 19 C 0.068 3.932 20 Cl -0.148 7.148 21 S -0.253 6.253 22 O -0.383 6.383 23 H 0.264 0.736 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.171 0.829 29 H 0.157 0.843 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.511 0.351 7.596 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.172 4.172 3 Si 0.757 3.243 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.118 1.118 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.121 3.879 10 H 0.048 0.952 11 C -0.168 4.168 12 C -0.175 4.175 13 C 0.020 3.980 14 H 0.097 0.903 15 C -0.137 4.137 16 H 0.173 0.827 17 C -0.138 4.138 18 C -0.196 4.196 19 C -0.086 4.086 20 Cl -0.121 7.121 21 S -0.026 6.026 22 O -0.303 6.303 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.188 0.812 29 H 0.175 0.825 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.370 0.369 6.874 17.759 hybrid contribution -1.442 1.085 0.255 1.822 sum 14.928 1.454 7.129 16.607 Atomic orbital electron populations 1.70076 1.08535 1.28113 1.51831 1.25892 0.95195 1.03502 0.92634 0.86068 0.82164 0.77886 0.78218 1.21316 1.22424 1.11849 1.21671 0.91638 0.92944 1.50999 0.94586 1.20443 0.91388 0.91285 0.84834 0.95197 1.22895 0.96861 0.96697 1.00345 1.23282 0.97928 0.99562 0.96690 1.22939 0.90643 0.89790 0.94607 0.90341 1.23600 0.96309 0.99180 0.94651 0.82717 1.22896 0.98298 0.92022 1.00611 1.22804 1.02617 1.00480 0.93719 1.25628 0.92113 0.89383 1.01486 1.98721 1.60110 1.54122 1.99158 1.87904 1.50219 1.06130 1.58321 1.88727 1.69876 1.36166 1.35545 0.92719 0.90548 0.92157 0.89885 0.88209 0.81223 0.82523 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 2 C 0.03 1.54 5.47 84.66 0.46 2.00 16 3 Si 0.93 44.50 27.01 68.60 1.85 46.36 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.20 -8.42 3.66 99.48 0.36 -8.06 16 7 C -0.54 -30.02 9.33 25.60 0.24 -29.78 16 8 H 0.04 2.23 7.77 -2.91 -0.02 2.21 16 9 C 0.18 7.88 2.82 30.32 0.09 7.96 16 10 H 0.03 1.39 7.53 -2.39 -0.02 1.38 16 11 C -0.13 -4.67 6.52 31.85 0.21 -4.46 16 12 C -0.14 -3.81 6.47 32.05 0.21 -3.60 16 13 C 0.08 2.43 3.28 31.26 0.10 2.53 16 14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.01 -0.23 3.34 30.08 0.10 -0.12 16 16 H 0.16 2.76 8.14 -2.39 -0.02 2.74 16 17 C -0.12 -2.78 9.27 28.00 0.26 -2.52 16 18 C -0.18 -4.55 9.73 27.99 0.27 -4.28 16 19 C 0.07 2.00 4.29 71.46 0.31 2.31 16 20 Cl -0.15 -4.02 28.79 -2.72 -0.08 -4.10 16 21 S -0.25 -7.24 20.79 -56.49 -1.17 -8.41 16 22 O -0.38 -15.40 6.75 -148.98 -1.01 -16.41 16 23 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 24 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 25 H 0.06 2.27 7.67 -2.39 -0.02 2.26 16 26 H 0.08 2.28 6.73 -2.39 -0.02 2.27 16 27 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.12 4.15 6.40 -2.39 -0.02 4.13 16 Total: -1.00 -65.90 268.80 2.93 -62.97 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.79 Total: 8.54 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 2.24 Total: -29.97 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.30 Total: -58.97 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.01 Total: -16.41 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.85 Total: 46.36 kcal Atomic # 16 Polarization: -7.24 SS G_CDS: -1.17 Total: -8.41 kcal Atomic # 17 Polarization: -4.02 SS G_CDS: -0.08 Total: -4.10 kcal Total: -65.90 2.93 -62.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725590557.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.228 kcal (2) G-P(sol) polarization free energy of solvation -65.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds