Wall clock time and date at job start Mon Mar 30 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.33069 * 302.24763 * 9 7 2 11 11 C 1.54478 * 110.37369 * 179.97438 * 9 7 2 12 12 C 1.54503 * 104.06299 * 217.19051 * 11 9 7 13 13 C 1.54481 * 104.06378 * 359.97438 * 12 11 9 14 14 H 1.09001 * 110.37187 * 265.14903 * 13 12 11 15 15 C 1.53002 * 110.37270 * 142.92133 * 13 12 11 16 16 H 1.09004 * 110.70592 * 64.29946 * 15 13 12 17 17 C 1.51426 * 110.79600 * 187.63520 * 15 13 12 18 18 C 1.29200 * 117.28251 * 134.36779 * 17 15 13 19 19 C 1.51424 * 117.57709 * 0.32747 * 18 17 15 20 20 Cl 1.80303 * 110.79597 * 225.26873 * 19 18 17 21 21 S 1.83829 * 110.79392 * 300.96537 * 15 13 12 22 22 O 1.44423 * 104.80027 * 23.98130 * 13 12 11 23 23 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 24 24 H 1.09003 * 110.50913 * 335.83700 * 11 9 7 25 25 H 1.08998 * 110.50949 * 98.54271 * 11 9 7 26 26 H 1.09003 * 110.51572 * 118.64365 * 12 11 9 27 27 H 1.08997 * 110.50979 * 241.35242 * 12 11 9 28 28 H 1.08001 * 121.24645 * 314.54391 * 17 15 13 29 29 H 1.07998 * 121.17349 * 180.13821 * 18 17 15 30 30 H 1.08995 * 110.96048 * 101.86549 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8907 -0.6481 -0.8639 11 6 4.0494 -2.6421 -0.0001 12 6 5.2990 -2.5786 0.9064 13 6 5.3688 -1.0994 1.3464 14 1 6.0343 -0.5392 0.6897 15 6 5.8436 -0.9972 2.7973 16 1 6.8641 -1.3674 2.8958 17 6 5.7380 0.4279 3.2983 18 6 5.2204 0.6074 4.4684 19 6 4.7745 -0.6208 5.2336 20 17 3.1450 -0.3648 5.9618 21 16 4.7081 -1.9064 3.9212 22 8 4.0144 -0.6135 1.2229 23 1 -0.4850 0.8400 -0.0004 24 1 3.3090 -3.3245 0.4174 25 1 4.3250 -2.9471 -1.0096 26 1 5.1765 -3.2296 1.7720 27 1 6.1924 -2.8522 0.3450 28 1 6.0794 1.2591 2.6992 29 1 5.1128 1.5975 4.8862 30 1 5.5016 -0.8878 6.0004 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725590558.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:27 Heat of formation + Delta-G solvation = -26.619480 kcal Electronic energy + Delta-G solvation = -15757.256098 eV Core-core repulsion = 13091.245384 eV Total energy + Delta-G solvation = -2666.010714 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.74015 -36.71659 -35.49512 -32.64081 -31.32024 -30.54330 -27.50513 -25.81081 -23.41406 -21.01868 -20.00501 -19.14687 -17.07813 -16.97566 -15.54666 -15.27669 -15.08387 -14.73969 -14.28653 -13.47639 -13.24553 -12.90215 -12.68398 -12.49585 -12.14891 -11.82344 -10.92560 -10.79745 -10.69165 -10.62517 -10.45856 -10.31198 -10.15733 -9.79088 -9.63219 -9.46101 -9.18504 -8.59335 -8.47252 -7.49228 -6.06673 -4.14187 1.47433 1.82401 2.09179 2.62938 3.41121 3.46339 3.54025 4.26994 4.47835 4.54631 4.74215 4.90192 5.06586 5.29885 5.39813 5.43560 5.53611 5.64169 5.95695 6.10737 6.13485 6.20896 6.43377 6.45004 6.59612 6.65807 7.15723 7.62914 8.11663 8.48616 8.95081 9.56020 11.04222 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.009386 C = 0.007821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.236080 B = 2982.379465 C = 3579.308490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.084 3.916 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.166 3.834 10 H 0.028 0.972 11 C -0.132 4.132 12 C -0.148 4.148 13 C 0.081 3.919 14 H 0.067 0.933 15 C -0.022 4.022 16 H 0.118 0.882 17 C -0.112 4.112 18 C -0.177 4.177 19 C 0.052 3.948 20 Cl -0.136 7.136 21 S -0.193 6.193 22 O -0.356 6.356 23 H 0.265 0.735 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.950 -0.301 7.900 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.120 4.120 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.110 3.890 10 H 0.046 0.954 11 C -0.170 4.170 12 C -0.186 4.186 13 C 0.021 3.979 14 H 0.085 0.915 15 C -0.150 4.150 16 H 0.136 0.864 17 C -0.131 4.131 18 C -0.196 4.196 19 C -0.102 4.102 20 Cl -0.109 7.109 21 S 0.033 5.967 22 O -0.276 6.276 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.941 -1.148 8.027 16.128 hybrid contribution 0.950 1.917 0.090 2.141 sum 14.891 0.769 8.117 16.977 Atomic orbital electron populations 1.69918 1.06526 1.27289 1.49143 1.25041 0.94682 0.99609 0.92697 0.86470 0.79536 0.82585 0.78744 1.19834 1.22642 1.19393 1.20934 0.87321 0.94822 1.51553 0.90216 1.21109 0.95704 0.88367 0.83789 0.95407 1.22815 0.95658 1.00582 0.97942 1.22971 0.99134 0.96357 1.00148 1.22591 0.89666 0.94644 0.91020 0.91493 1.23386 0.99921 0.94086 0.97636 0.86443 1.22750 0.98133 0.97118 0.95148 1.22720 1.01847 0.98444 0.96603 1.25488 0.88711 0.96575 0.99419 1.98762 1.30280 1.97081 1.84774 1.88398 1.65549 1.27275 1.15482 1.89452 1.21947 1.70687 1.45500 0.92537 0.90931 0.92334 0.91215 0.91712 0.84080 0.84109 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.84 13.96 55.43 0.77 -27.07 16 2 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 3 Si 0.90 23.16 26.48 -169.99 -4.50 18.66 16 4 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.59 6.48 56.52 0.37 -6.22 16 7 C -0.51 -14.73 9.35 -34.44 -0.32 -15.05 16 8 H 0.08 2.47 7.81 -52.49 -0.41 2.06 16 9 C 0.17 3.98 2.50 -27.10 -0.07 3.91 16 10 H 0.03 0.68 7.07 -51.93 -0.37 0.31 16 11 C -0.13 -2.63 6.62 -25.17 -0.17 -2.80 16 12 C -0.15 -2.43 6.45 -25.17 -0.16 -2.59 16 13 C 0.08 1.40 3.13 -25.95 -0.08 1.32 16 14 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.02 -0.32 3.31 -27.53 -0.09 -0.41 16 16 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.11 -1.56 9.30 -35.18 -0.33 -1.89 16 18 C -0.18 -2.41 9.74 -35.18 -0.34 -2.75 16 19 C 0.05 0.74 4.50 36.36 0.16 0.90 16 20 Cl -0.14 -2.18 28.80 -51.86 -1.49 -3.67 16 21 S -0.19 -3.23 20.76 -107.50 -2.23 -5.47 16 22 O -0.36 -8.21 8.47 -35.23 -0.30 -8.50 16 23 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 24 H 0.07 1.54 7.71 -51.93 -0.40 1.14 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.15 6.60 -51.93 -0.34 0.80 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 273.88 15.07 4.13 4.13 Total: -1.00 -32.36 273.88 -8.77 -41.13 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -3.65 Total: -2.25 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.50 Total: -16.96 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.77 Total: -27.07 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.30 Total: -8.50 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.50 Total: 18.66 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.23 Total: -5.47 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.49 Total: -3.67 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.36 -8.77 -41.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725590558.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.506 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds