Wall clock time and date at job start Mon Mar 30 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09001 * 110.33069 * 302.24763 * 9 7 2 11 11 C 1.54478 * 110.37369 * 179.97438 * 9 7 2 12 12 C 1.54503 * 104.06299 * 217.19051 * 11 9 7 13 13 C 1.54481 * 104.06378 * 359.97438 * 12 11 9 14 14 H 1.09001 * 110.37187 * 265.14903 * 13 12 11 15 15 C 1.53002 * 110.37270 * 142.92133 * 13 12 11 16 16 H 1.09004 * 110.70592 * 64.29946 * 15 13 12 17 17 C 1.51426 * 110.79600 * 187.63520 * 15 13 12 18 18 C 1.29200 * 117.28251 * 134.36779 * 17 15 13 19 19 C 1.51424 * 117.57709 * 0.32747 * 18 17 15 20 20 Cl 1.80303 * 110.79597 * 225.26873 * 19 18 17 21 21 S 1.83829 * 110.79392 * 300.96537 * 15 13 12 22 22 O 1.44423 * 104.80027 * 23.98130 * 13 12 11 23 23 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 24 24 H 1.09003 * 110.50913 * 335.83700 * 11 9 7 25 25 H 1.08998 * 110.50949 * 98.54271 * 11 9 7 26 26 H 1.09003 * 110.51572 * 118.64365 * 12 11 9 27 27 H 1.08997 * 110.50979 * 241.35242 * 12 11 9 28 28 H 1.08001 * 121.24645 * 314.54391 * 17 15 13 29 29 H 1.07998 * 121.17349 * 180.13821 * 18 17 15 30 30 H 1.08995 * 110.96048 * 101.86549 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8907 -0.6481 -0.8639 11 6 4.0494 -2.6421 -0.0001 12 6 5.2990 -2.5786 0.9064 13 6 5.3688 -1.0994 1.3464 14 1 6.0343 -0.5392 0.6897 15 6 5.8436 -0.9972 2.7973 16 1 6.8641 -1.3674 2.8958 17 6 5.7380 0.4279 3.2983 18 6 5.2204 0.6074 4.4684 19 6 4.7745 -0.6208 5.2336 20 17 3.1450 -0.3648 5.9618 21 16 4.7081 -1.9064 3.9212 22 8 4.0144 -0.6135 1.2229 23 1 -0.4850 0.8400 -0.0004 24 1 3.3090 -3.3245 0.4174 25 1 4.3250 -2.9471 -1.0096 26 1 5.1765 -3.2296 1.7720 27 1 6.1924 -2.8522 0.3450 28 1 6.0794 1.2591 2.6992 29 1 5.1128 1.5975 4.8862 30 1 5.5016 -0.8878 6.0004 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725590558.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:27 Heat of formation + Delta-G solvation = -46.980307 kcal Electronic energy + Delta-G solvation = -15758.139010 eV Core-core repulsion = 13091.245384 eV Total energy + Delta-G solvation = -2666.893625 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26507 -37.87437 -36.68344 -34.76612 -32.84842 -32.11127 -29.08113 -27.13727 -25.00783 -22.55121 -21.63140 -20.24807 -19.11106 -18.23842 -16.99813 -16.82585 -16.29053 -16.09853 -16.00879 -15.05951 -14.70890 -14.49836 -14.24258 -13.95213 -13.47646 -13.27505 -12.83756 -12.48274 -12.18456 -11.95270 -11.86066 -11.68317 -11.62507 -11.47042 -11.35016 -11.15052 -10.83032 -10.30561 -10.21072 -8.76180 -8.33113 -6.45176 0.35242 0.71926 0.96267 1.34271 1.44083 1.49960 1.55664 2.37962 2.85364 3.21656 3.43132 3.65453 3.83438 3.92819 4.05315 4.16823 4.30544 4.48488 4.56486 4.61803 4.78466 5.00095 5.03374 5.17154 5.22548 5.39250 5.43527 5.56326 6.23016 6.39324 6.70251 7.29160 8.81927 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.009386 C = 0.007821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.236080 B = 2982.379465 C = 3579.308490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.242 1.242 7 C -0.521 4.521 8 H 0.035 0.965 9 C 0.167 3.833 10 H 0.035 0.965 11 C -0.132 4.132 12 C -0.136 4.136 13 C 0.070 3.930 14 H 0.098 0.902 15 C -0.005 4.005 16 H 0.160 0.840 17 C -0.119 4.119 18 C -0.183 4.183 19 C 0.068 3.932 20 Cl -0.160 7.160 21 S -0.272 6.272 22 O -0.383 6.383 23 H 0.267 0.733 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.617 0.885 7.944 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.165 1.165 7 C -0.558 4.558 8 H 0.053 0.947 9 C 0.111 3.889 10 H 0.052 0.948 11 C -0.170 4.170 12 C -0.174 4.174 13 C 0.011 3.989 14 H 0.116 0.884 15 C -0.133 4.133 16 H 0.177 0.823 17 C -0.139 4.139 18 C -0.203 4.203 19 C -0.086 4.086 20 Cl -0.134 7.134 21 S -0.045 6.045 22 O -0.303 6.303 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.125 0.875 28 H 0.180 0.820 29 H 0.176 0.824 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 17.632 0.015 8.068 19.390 hybrid contribution -0.171 1.449 0.100 1.463 sum 17.461 1.465 8.168 19.332 Atomic orbital electron populations 1.70067 1.08434 1.28268 1.51485 1.25970 0.95424 1.03600 0.92501 0.85419 0.79237 0.77755 0.78583 1.20301 1.22276 1.16550 1.21251 0.90612 0.93089 1.50844 0.94691 1.20883 0.92505 0.91069 0.84431 0.94791 1.22737 0.96716 0.97459 1.00069 1.22929 0.98732 0.96074 0.99650 1.22999 0.87261 0.95104 0.93532 0.88413 1.23517 1.00682 0.94144 0.94947 0.82281 1.22996 0.98300 0.97266 0.95344 1.22931 1.01632 0.98859 0.96846 1.25782 0.87825 0.95681 0.99311 1.98764 1.32490 1.97098 1.85055 1.88702 1.67268 1.29972 1.18579 1.89328 1.25492 1.71019 1.44486 0.92464 0.93852 0.90111 0.91563 0.87540 0.82025 0.82363 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.09 13.96 21.45 0.30 -60.79 16 2 C 0.02 1.46 5.47 84.65 0.46 1.93 16 3 Si 0.96 47.64 26.48 68.60 1.82 49.45 16 4 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.24 -10.77 6.48 99.48 0.64 -10.12 16 7 C -0.52 -31.00 9.35 25.60 0.24 -30.76 16 8 H 0.03 2.31 7.81 -2.92 -0.02 2.28 16 9 C 0.17 7.84 2.50 30.35 0.08 7.92 16 10 H 0.03 1.57 7.07 -2.39 -0.02 1.55 16 11 C -0.13 -5.08 6.62 31.61 0.21 -4.88 16 12 C -0.14 -3.99 6.45 31.61 0.20 -3.79 16 13 C 0.07 2.13 3.13 31.10 0.10 2.23 16 14 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.01 -0.13 3.31 30.08 0.10 -0.03 16 16 H 0.16 2.68 8.14 -2.39 -0.02 2.66 16 17 C -0.12 -2.83 9.30 27.70 0.26 -2.57 16 18 C -0.18 -4.38 9.74 27.70 0.27 -4.11 16 19 C 0.07 1.75 4.50 71.47 0.32 2.07 16 20 Cl -0.16 -5.04 28.80 -2.72 -0.08 -5.12 16 21 S -0.27 -8.64 20.76 -56.49 -1.17 -9.81 16 22 O -0.38 -16.80 8.47 -148.98 -1.26 -18.06 16 23 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 24 H 0.04 1.88 7.71 -2.39 -0.02 1.87 16 25 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.07 2.02 6.60 -2.39 -0.02 2.00 16 27 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 30 H 0.16 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -73.47 273.88 2.91 -70.56 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.07 Total: 5.76 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 2.24 Total: -32.00 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.30 Total: -60.79 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -1.26 Total: -18.06 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.82 Total: 49.45 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.17 Total: -9.81 kcal Atomic # 17 Polarization: -5.04 SS G_CDS: -0.08 Total: -5.12 kcal Total: -73.47 2.91 -70.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725590558.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.584 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds