Wall clock time and date at job start Mon Mar 30 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00087 * 2 1 4 4 H 1.48500 * 109.47092 * 269.99888 * 3 2 1 5 5 H 1.48497 * 109.47098 * 29.99695 * 3 2 1 6 6 H 1.48503 * 109.46916 * 149.99839 * 3 2 1 7 7 C 1.37879 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00303 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.35196 * 302.14709 * 9 7 2 11 11 C 1.54944 * 110.31104 * 180.02562 * 9 7 2 12 12 C 1.55304 * 100.97800 * 204.65934 * 11 9 7 13 13 C 1.54384 * 102.25492 * 34.11596 * 12 11 9 14 14 H 1.09001 * 109.83398 * 98.15407 * 13 12 11 15 15 C 1.52995 * 109.82953 * 219.12964 * 13 12 11 16 16 H 1.08997 * 110.71110 * 56.66205 * 15 13 12 17 17 C 1.51426 * 110.79485 * 179.97438 * 15 13 12 18 18 C 1.28875 * 117.49838 * 101.97613 * 17 15 13 19 19 C 1.51432 * 117.50111 * 359.97438 * 18 17 15 20 20 Cl 1.80301 * 110.79454 * 257.83386 * 19 18 17 21 21 S 1.83833 * 102.53710 * 16.28508 * 19 18 17 22 22 O 1.43240 * 107.58460 * 338.63785 * 13 12 11 23 23 H 0.97001 * 120.00015 * 0.02562 * 1 2 3 24 24 H 1.09002 * 111.12633 * 86.72064 * 11 9 7 25 25 H 1.08995 * 111.12590 * 322.60066 * 11 9 7 26 26 H 1.09006 * 110.84773 * 152.30089 * 12 11 9 27 27 H 1.08993 * 110.84888 * 275.71592 * 12 11 9 28 28 H 1.08001 * 121.25368 * 282.00017 * 17 15 13 29 29 H 1.08002 * 121.25198 * 180.02562 * 18 17 15 30 30 H 1.08993 * 110.79620 * 134.54968 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8910 -0.6506 -0.8641 11 6 4.0493 -2.6473 0.0010 12 6 5.4511 -2.4439 0.6377 13 6 5.1927 -1.2988 1.6403 14 1 5.0429 -1.7085 2.6392 15 6 6.3813 -0.3354 1.6455 16 1 6.5694 0.0500 0.6435 17 6 6.1501 0.7982 2.6225 18 6 6.7530 0.7359 3.7598 19 6 7.6379 -0.4657 4.0172 20 17 6.8057 -1.6565 5.0851 21 16 7.8792 -1.1525 2.3292 22 8 4.0109 -0.6100 1.2153 23 1 -0.4850 0.8401 -0.0004 24 1 4.1315 -3.0357 -1.0141 25 1 3.4279 -3.2962 0.6181 26 1 5.7768 -3.3464 1.1552 27 1 6.1801 -2.1467 -0.1161 28 1 5.5040 1.6277 2.3756 29 1 6.6311 1.5111 4.5018 30 1 8.5901 -0.1594 4.4502 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725590559.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:30 Heat of formation + Delta-G solvation = -31.751278 kcal Electronic energy + Delta-G solvation = -15654.554621 eV Core-core repulsion = 12988.321376 eV Total energy + Delta-G solvation = -2666.233245 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.88952 -36.86835 -35.52979 -32.69045 -31.35939 -30.51663 -27.73887 -25.91014 -23.47597 -20.80555 -20.38682 -18.89418 -17.63187 -16.81330 -15.71483 -15.43667 -15.37444 -14.88422 -14.07021 -13.57356 -13.19180 -12.77559 -12.54425 -12.44556 -12.39351 -12.03433 -11.07320 -11.00386 -10.84151 -10.74225 -10.51588 -10.41417 -10.14798 -9.96980 -9.74502 -9.50137 -9.45636 -8.61640 -8.40414 -7.90442 -6.14511 -4.22567 1.31215 1.51195 1.88656 2.56476 3.32458 3.38373 3.57551 4.17307 4.46870 4.51869 4.71414 4.83905 5.05084 5.21595 5.37962 5.40680 5.61061 5.63796 5.95241 6.11282 6.13430 6.27490 6.36322 6.37667 6.60011 6.63210 7.14479 7.57458 8.20028 8.40238 8.88028 9.49104 10.96253 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.007017 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.801404 B = 3989.322912 C = 4259.657339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.083 3.917 3 Si 0.873 3.127 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.229 1.229 7 C -0.521 4.521 8 H 0.078 0.922 9 C 0.171 3.829 10 H 0.028 0.972 11 C -0.135 4.135 12 C -0.147 4.147 13 C 0.094 3.906 14 H 0.077 0.923 15 C -0.032 4.032 16 H 0.121 0.879 17 C -0.092 4.092 18 C -0.193 4.193 19 C 0.064 3.936 20 Cl -0.153 7.153 21 S -0.230 6.230 22 O -0.369 6.369 23 H 0.265 0.735 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.228 0.684 6.104 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.122 4.122 3 Si 0.699 3.301 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.152 1.152 7 C -0.558 4.558 8 H 0.096 0.904 9 C 0.116 3.884 10 H 0.045 0.955 11 C -0.173 4.173 12 C -0.185 4.185 13 C 0.034 3.966 14 H 0.095 0.905 15 C -0.160 4.160 16 H 0.139 0.861 17 C -0.112 4.112 18 C -0.212 4.212 19 C -0.090 4.090 20 Cl -0.127 7.127 21 S -0.004 6.004 22 O -0.289 6.289 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.165 0.835 29 H 0.163 0.837 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 16.813 0.108 5.796 17.784 hybrid contribution -0.521 1.426 0.475 1.590 sum 16.292 1.533 6.271 17.524 Atomic orbital electron populations 1.69923 1.06679 1.27435 1.48775 1.25073 0.94671 0.99797 0.92623 0.86924 0.82504 0.82458 0.78198 1.21080 1.21732 1.15177 1.21044 0.87764 0.94842 1.52166 0.90355 1.21019 0.95135 0.88546 0.83694 0.95481 1.23147 0.93871 0.99869 1.00373 1.23107 0.98662 0.98495 0.98237 1.22626 0.85024 0.89809 0.99139 0.90484 1.23864 0.94270 0.96083 1.01787 0.86094 1.22901 0.96242 0.98004 0.94079 1.22599 1.01593 0.97813 0.99230 1.25532 0.99836 0.90503 0.93145 1.98778 1.81977 1.61768 1.70127 1.88045 1.35447 1.69900 1.06968 1.88907 1.38230 1.57087 1.44706 0.92499 0.91365 0.90850 0.90697 0.91646 0.83457 0.83708 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 3 Si 0.87 21.26 27.04 -169.99 -4.60 16.66 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.23 -5.23 5.54 56.52 0.31 -4.91 16 7 C -0.52 -14.59 9.38 -34.44 -0.32 -14.92 16 8 H 0.08 2.36 8.00 -52.48 -0.42 1.94 16 9 C 0.17 3.97 2.67 -26.86 -0.07 3.90 16 10 H 0.03 0.63 7.49 -51.93 -0.39 0.24 16 11 C -0.13 -2.61 6.53 -24.48 -0.16 -2.77 16 12 C -0.15 -2.43 6.12 -24.78 -0.15 -2.58 16 13 C 0.09 1.69 3.12 -26.01 -0.08 1.61 16 14 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 15 C -0.03 -0.48 2.96 -27.53 -0.08 -0.56 16 16 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 17 C -0.09 -1.30 9.36 -35.10 -0.33 -1.62 16 18 C -0.19 -2.30 9.74 -35.10 -0.34 -2.64 16 19 C 0.06 0.76 4.49 36.37 0.16 0.92 16 20 Cl -0.15 -2.03 28.81 -51.86 -1.49 -3.52 16 21 S -0.23 -3.09 22.20 -107.50 -2.39 -5.48 16 22 O -0.37 -8.25 7.76 -35.23 -0.27 -8.53 16 23 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.06 0.99 7.85 -51.93 -0.41 0.59 16 28 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 275.86 15.07 4.16 4.16 Total: -1.00 -29.99 275.86 -9.11 -39.10 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -3.82 Total: 0.32 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.47 Total: -16.38 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.33 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.27 Total: -8.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.60 Total: 16.66 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.39 Total: -5.48 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -1.49 Total: -3.52 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.99 -9.11 -39.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725590559.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.345 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds