Wall clock time and date at job start Mon Mar 30 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00087 * 2 1 4 4 H 1.48500 * 109.47092 * 269.99888 * 3 2 1 5 5 H 1.48497 * 109.47098 * 29.99695 * 3 2 1 6 6 H 1.48503 * 109.46916 * 149.99839 * 3 2 1 7 7 C 1.37879 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00047 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00303 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.35196 * 302.14709 * 9 7 2 11 11 C 1.54944 * 110.31104 * 180.02562 * 9 7 2 12 12 C 1.55304 * 100.97800 * 204.65934 * 11 9 7 13 13 C 1.54384 * 102.25492 * 34.11596 * 12 11 9 14 14 H 1.09001 * 109.83398 * 98.15407 * 13 12 11 15 15 C 1.52995 * 109.82953 * 219.12964 * 13 12 11 16 16 H 1.08997 * 110.71110 * 56.66205 * 15 13 12 17 17 C 1.51426 * 110.79485 * 179.97438 * 15 13 12 18 18 C 1.28875 * 117.49838 * 101.97613 * 17 15 13 19 19 C 1.51432 * 117.50111 * 359.97438 * 18 17 15 20 20 Cl 1.80301 * 110.79454 * 257.83386 * 19 18 17 21 21 S 1.83833 * 102.53710 * 16.28508 * 19 18 17 22 22 O 1.43240 * 107.58460 * 338.63785 * 13 12 11 23 23 H 0.97001 * 120.00015 * 0.02562 * 1 2 3 24 24 H 1.09002 * 111.12633 * 86.72064 * 11 9 7 25 25 H 1.08995 * 111.12590 * 322.60066 * 11 9 7 26 26 H 1.09006 * 110.84773 * 152.30089 * 12 11 9 27 27 H 1.08993 * 110.84888 * 275.71592 * 12 11 9 28 28 H 1.08001 * 121.25368 * 282.00017 * 17 15 13 29 29 H 1.08002 * 121.25198 * 180.02562 * 18 17 15 30 30 H 1.08993 * 110.79620 * 134.54968 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8910 -0.6506 -0.8641 11 6 4.0493 -2.6473 0.0010 12 6 5.4511 -2.4439 0.6377 13 6 5.1927 -1.2988 1.6403 14 1 5.0429 -1.7085 2.6392 15 6 6.3813 -0.3354 1.6455 16 1 6.5694 0.0500 0.6435 17 6 6.1501 0.7982 2.6225 18 6 6.7530 0.7359 3.7598 19 6 7.6379 -0.4657 4.0172 20 17 6.8057 -1.6565 5.0851 21 16 7.8792 -1.1525 2.3292 22 8 4.0109 -0.6100 1.2153 23 1 -0.4850 0.8401 -0.0004 24 1 4.1315 -3.0357 -1.0141 25 1 3.4279 -3.2962 0.6181 26 1 5.7768 -3.3464 1.1552 27 1 6.1801 -2.1467 -0.1161 28 1 5.5040 1.6277 2.3756 29 1 6.6311 1.5111 4.5018 30 1 8.5901 -0.1594 4.4502 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725590559.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:30 Heat of formation + Delta-G solvation = -49.181395 kcal Electronic energy + Delta-G solvation = -15655.310448 eV Core-core repulsion = 12988.321376 eV Total energy + Delta-G solvation = -2666.989072 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.038 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.41176 -37.95454 -36.57480 -34.76877 -32.90585 -32.04396 -29.18779 -27.22688 -25.04679 -22.27392 -22.05832 -19.96581 -19.04404 -18.58114 -17.23271 -16.93287 -16.45421 -16.24130 -15.63777 -15.00219 -14.71662 -14.35053 -14.02388 -13.89377 -13.55641 -13.39603 -12.83784 -12.59089 -12.31226 -12.05099 -11.94251 -11.68168 -11.62181 -11.50293 -11.27442 -11.16223 -10.76547 -10.61715 -10.05185 -8.99039 -8.34044 -6.47425 0.32405 0.52300 0.79889 1.38549 1.41343 1.60882 1.67026 2.42834 2.89679 3.18056 3.41412 3.69626 3.78020 3.87207 3.92113 4.10433 4.25221 4.41621 4.57158 4.68224 4.80211 4.93131 5.07460 5.11746 5.18460 5.39525 5.46293 5.54196 6.21017 6.45073 6.71437 7.29112 8.80360 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.027722 B = 0.007017 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.801404 B = 3989.322912 C = 4259.657339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.022 3.978 3 Si 0.939 3.061 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.205 1.205 7 C -0.533 4.533 8 H 0.037 0.963 9 C 0.172 3.828 10 H 0.035 0.965 11 C -0.134 4.134 12 C -0.133 4.133 13 C 0.090 3.910 14 H 0.068 0.932 15 C -0.033 4.033 16 H 0.124 0.876 17 C -0.121 4.121 18 C -0.172 4.172 19 C 0.065 3.935 20 Cl -0.166 7.166 21 S -0.226 6.226 22 O -0.389 6.389 23 H 0.267 0.733 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.172 0.828 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.327 1.606 6.788 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.127 1.127 7 C -0.570 4.570 8 H 0.055 0.945 9 C 0.116 3.884 10 H 0.052 0.948 11 C -0.171 4.171 12 C -0.171 4.171 13 C 0.030 3.970 14 H 0.086 0.914 15 C -0.161 4.161 16 H 0.142 0.858 17 C -0.141 4.141 18 C -0.191 4.191 19 C -0.089 4.089 20 Cl -0.140 7.140 21 S 0.001 5.999 22 O -0.310 6.310 23 H 0.076 0.924 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.162 0.838 29 H 0.189 0.811 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 19.936 1.007 6.483 20.988 hybrid contribution -1.464 1.023 0.337 1.817 sum 18.472 2.030 6.820 19.795 Atomic orbital electron populations 1.70072 1.08612 1.28441 1.51038 1.26042 0.95434 1.03930 0.92277 0.85905 0.81904 0.77241 0.78768 1.20112 1.22071 1.12669 1.21357 0.90772 0.93284 1.51619 0.94499 1.20832 0.92146 0.91160 0.84259 0.94766 1.23076 0.95313 0.97262 1.01493 1.23059 0.97062 0.98744 0.98210 1.22762 0.84663 0.90850 0.98744 0.91440 1.23663 0.93770 0.95917 1.02788 0.85771 1.22912 0.97999 0.98219 0.94947 1.22878 0.99639 0.97846 0.98783 1.25866 1.01096 0.89779 0.92202 1.98786 1.82390 1.62375 1.70430 1.88044 1.33747 1.70022 1.08046 1.88775 1.40570 1.57552 1.44086 0.92427 0.89683 0.92504 0.89038 0.89638 0.83758 0.81078 0.81089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 2 C 0.02 1.31 5.47 84.66 0.46 1.78 16 3 Si 0.94 44.09 27.04 68.60 1.86 45.94 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.20 -8.75 5.54 99.48 0.55 -8.20 16 7 C -0.53 -30.74 9.38 25.60 0.24 -30.50 16 8 H 0.04 2.35 8.00 -2.91 -0.02 2.32 16 9 C 0.17 7.88 2.67 30.51 0.08 7.96 16 10 H 0.03 1.54 7.49 -2.39 -0.02 1.52 16 11 C -0.13 -5.06 6.53 32.05 0.21 -4.85 16 12 C -0.13 -4.07 6.12 31.86 0.19 -3.88 16 13 C 0.09 3.04 3.12 31.06 0.10 3.14 16 14 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 15 C -0.03 -0.90 2.96 30.08 0.09 -0.81 16 16 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 17 C -0.12 -3.04 9.36 28.00 0.26 -2.78 16 18 C -0.17 -3.49 9.74 28.00 0.27 -3.21 16 19 C 0.06 1.28 4.49 71.47 0.32 1.60 16 20 Cl -0.17 -3.98 28.81 -2.72 -0.08 -4.06 16 21 S -0.23 -5.32 22.20 -56.49 -1.25 -6.57 16 22 O -0.39 -16.93 7.76 -148.98 -1.16 -18.09 16 23 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 24 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 25 H 0.06 2.30 8.04 -2.39 -0.02 2.29 16 26 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 27 H 0.09 2.30 7.85 -2.39 -0.02 2.28 16 28 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.17 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -66.40 275.86 2.87 -63.53 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.97 Total: 9.88 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 2.23 Total: -31.55 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.30 Total: -59.09 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -1.16 Total: -18.09 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.86 Total: 45.94 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -1.25 Total: -6.57 kcal Atomic # 17 Polarization: -3.98 SS G_CDS: -0.08 Total: -4.06 kcal Total: -66.40 2.87 -63.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725590559.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.351 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds