Wall clock time and date at job start Mon Mar 30 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00099 * 2 1 4 4 H 1.48502 * 109.46641 * 239.99948 * 3 2 1 5 5 H 1.48502 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47165 * 120.00112 * 3 2 1 7 7 C 1.37880 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99390 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00254 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46862 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46819 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46914 * 180.02562 * 11 10 9 13 13 O 1.42097 * 109.46578 * 296.38537 * 12 11 10 14 14 C 1.81406 * 102.99702 * 179.97438 * 12 11 10 15 15 C 1.50700 * 109.46869 * 179.97438 * 14 12 11 16 16 C 1.33635 * 126.03862 * 89.98409 * 15 14 12 17 17 N 1.31776 * 114.50289 * 180.02562 * 16 15 14 18 18 C 1.29027 * 117.12568 * 0.02562 * 17 16 15 19 19 S 1.70977 * 110.16578 * 359.97438 * 18 17 16 20 20 H 0.96994 * 119.99874 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47184 * 59.99491 * 9 7 2 22 22 H 1.08996 * 109.46992 * 299.99113 * 9 7 2 23 23 H 1.09000 * 109.47077 * 60.00111 * 10 9 7 24 24 H 1.08993 * 109.47645 * 299.99828 * 10 9 7 25 25 H 1.09000 * 109.47017 * 60.00305 * 11 10 9 26 26 H 1.08996 * 109.47202 * 299.99901 * 11 10 9 27 27 H 1.09003 * 109.46724 * 59.99852 * 14 12 11 28 28 H 1.08995 * 109.46983 * 299.99865 * 14 12 11 29 29 H 1.08004 * 122.75010 * 0.03733 * 16 15 14 30 30 H 1.07998 * 124.92077 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.4193 -6.3396 -1.1982 14 6 1.5806 -7.8247 0.0034 15 6 2.4246 -9.0732 0.0036 16 6 2.8659 -9.7238 1.0842 17 7 3.5891 -10.7934 0.8208 18 6 3.7830 -11.0810 -0.4220 19 16 3.0048 -9.9324 -1.4212 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5568 0.8903 23 1 2.8719 -3.6043 0.8905 24 1 2.8719 -3.6044 -0.8894 25 1 0.8533 -5.0451 -0.8886 26 1 0.8539 -5.0446 0.8914 27 1 0.9512 -7.8120 -0.8864 28 1 0.9518 -7.8107 0.8936 29 1 2.6474 -9.3997 2.0911 30 1 4.3535 -11.9254 -0.7794 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118376900.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:07 Heat of formation + Delta-G solvation = -7.993267 kcal Electronic energy + Delta-G solvation = -14151.791733 eV Core-core repulsion = 11586.351081 eV Total energy + Delta-G solvation = -2565.440652 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.77920 -35.57485 -34.47585 -32.92176 -32.05881 -27.87018 -27.38682 -24.62366 -23.38287 -20.51153 -20.17975 -18.38649 -17.38503 -16.37184 -15.86863 -15.52812 -14.98014 -14.54203 -14.28717 -14.21091 -14.13520 -13.59042 -13.06232 -12.46474 -12.28793 -12.00672 -11.51189 -11.39474 -10.89598 -10.85354 -10.76473 -10.41961 -9.87935 -9.83517 -9.66999 -9.32634 -9.19329 -8.87141 -8.37984 -8.05560 -6.03121 -4.05993 0.38834 1.11396 1.54844 1.63156 2.62413 2.74399 3.32462 3.36577 3.39536 3.81796 4.13574 4.44055 4.53736 4.76409 5.03621 5.32427 5.36457 5.40499 5.47514 5.53722 5.93083 6.13369 6.45788 6.64650 6.99839 7.46113 7.62001 7.74281 7.95872 8.37521 9.00712 9.58422 11.08118 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.066190 B = 0.003394 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.925639 B = 8246.942132 C = 8318.812363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.433 4.433 12 S 1.234 4.766 13 O -0.836 6.836 14 C -0.380 4.380 15 C -0.191 4.191 16 C 0.030 3.970 17 N -0.468 5.468 18 C 0.008 3.992 19 S 0.132 5.868 20 H 0.261 0.739 21 H 0.014 0.986 22 H 0.020 0.980 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.138 0.862 29 H 0.184 0.816 30 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 -20.738 2.886 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.572 4.572 12 S 1.434 4.566 13 O -0.832 6.832 14 C -0.516 4.516 15 C -0.314 4.314 16 C -0.123 4.123 17 N -0.181 5.181 18 C -0.290 4.290 19 S 0.384 5.616 20 H 0.071 0.929 21 H 0.033 0.967 22 H 0.038 0.962 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.134 0.866 27 H 0.116 0.884 28 H 0.156 0.844 29 H 0.201 0.799 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.836 -20.890 2.174 21.552 hybrid contribution -1.256 1.137 -1.051 1.994 sum 3.581 -19.752 1.123 20.106 Atomic orbital electron populations 1.69951 1.06095 1.26796 1.50732 1.25028 0.94867 0.99319 0.95212 0.86634 0.79581 0.82957 0.78720 1.20227 1.21276 1.20082 1.21239 0.93135 0.91035 1.50852 0.92565 1.19089 0.93778 0.90871 0.97366 1.21326 0.98996 0.91763 1.01180 1.27682 1.11528 1.10674 1.07307 1.70885 0.87917 0.85266 1.12542 1.93126 1.55719 1.83600 1.50723 1.26334 1.09066 1.07429 1.08751 1.25209 1.07768 1.02851 0.95539 1.21837 0.98252 0.92025 1.00205 1.66335 1.15756 1.16843 1.19157 1.28368 1.04999 1.04131 0.91476 1.84374 1.45846 1.19839 1.11500 0.92904 0.96748 0.96205 0.92038 0.92771 0.89960 0.86641 0.88410 0.84381 0.79936 0.78470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.87 5.16 -26.73 -0.14 -2.00 16 11 C -0.43 -6.48 5.92 37.16 0.22 -6.26 16 12 S 1.23 15.10 13.14 -107.50 -1.41 13.69 16 13 O -0.84 -15.45 18.14 -35.23 -0.64 -16.09 16 14 C -0.38 -3.69 6.46 36.01 0.23 -3.46 16 15 C -0.19 -2.05 5.86 -35.92 -0.21 -2.26 16 16 C 0.03 0.30 11.25 -19.19 -0.22 0.08 16 17 N -0.47 -5.20 10.54 -15.75 -0.17 -5.36 16 18 C 0.01 0.07 12.23 51.58 0.63 0.71 16 19 S 0.13 1.42 23.22 -107.50 -2.50 -1.08 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 26 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 28 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -36.42 292.91 -8.38 -44.80 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: -3.77 Total: -4.62 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -0.03 Total: -26.25 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.57 Total: -31.48 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.64 Total: -16.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 16.52 SS G_CDS: -3.91 Total: 12.61 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -36.42 -8.38 -44.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118376900.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.812 kcal (2) G-P(sol) polarization free energy of solvation -36.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds