Wall clock time and date at job start Mon Mar 30 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00099 * 2 1 4 4 H 1.48502 * 109.46641 * 239.99948 * 3 2 1 5 5 H 1.48502 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47165 * 120.00112 * 3 2 1 7 7 C 1.37880 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99390 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00254 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46862 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46819 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46914 * 180.02562 * 11 10 9 13 13 O 1.42097 * 109.46578 * 296.38537 * 12 11 10 14 14 C 1.81406 * 102.99702 * 179.97438 * 12 11 10 15 15 C 1.50700 * 109.46869 * 179.97438 * 14 12 11 16 16 C 1.33635 * 126.03862 * 89.98409 * 15 14 12 17 17 N 1.31776 * 114.50289 * 180.02562 * 16 15 14 18 18 C 1.29027 * 117.12568 * 0.02562 * 17 16 15 19 19 S 1.70977 * 110.16578 * 359.97438 * 18 17 16 20 20 H 0.96994 * 119.99874 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47184 * 59.99491 * 9 7 2 22 22 H 1.08996 * 109.46992 * 299.99113 * 9 7 2 23 23 H 1.09000 * 109.47077 * 60.00111 * 10 9 7 24 24 H 1.08993 * 109.47645 * 299.99828 * 10 9 7 25 25 H 1.09000 * 109.47017 * 60.00305 * 11 10 9 26 26 H 1.08996 * 109.47202 * 299.99901 * 11 10 9 27 27 H 1.09003 * 109.46724 * 59.99852 * 14 12 11 28 28 H 1.08995 * 109.46983 * 299.99865 * 14 12 11 29 29 H 1.08004 * 122.75010 * 0.03733 * 16 15 14 30 30 H 1.07998 * 124.92077 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.4193 -6.3396 -1.1982 14 6 1.5806 -7.8247 0.0034 15 6 2.4246 -9.0732 0.0036 16 6 2.8659 -9.7238 1.0842 17 7 3.5891 -10.7934 0.8208 18 6 3.7830 -11.0810 -0.4220 19 16 3.0048 -9.9324 -1.4212 20 1 -0.4850 0.8400 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6241 -2.5568 0.8903 23 1 2.8719 -3.6043 0.8905 24 1 2.8719 -3.6044 -0.8894 25 1 0.8533 -5.0451 -0.8886 26 1 0.8539 -5.0446 0.8914 27 1 0.9512 -7.8120 -0.8864 28 1 0.9518 -7.8107 0.8936 29 1 2.6474 -9.3997 2.0911 30 1 4.3535 -11.9254 -0.7794 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118376900.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:07 Heat of formation + Delta-G solvation = -34.364616 kcal Electronic energy + Delta-G solvation = -14152.935280 eV Core-core repulsion = 11586.351081 eV Total energy + Delta-G solvation = -2566.584199 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54098 -36.84802 -36.30332 -34.02568 -33.71348 -29.46910 -28.40741 -25.67148 -25.03575 -22.13623 -21.01481 -19.25188 -18.62644 -18.25616 -16.75186 -16.66699 -16.39716 -16.21160 -15.49688 -15.17792 -14.89838 -14.63399 -14.29326 -14.02426 -13.86308 -13.44359 -13.05340 -12.68287 -12.55907 -12.51128 -12.18071 -11.92923 -11.59881 -11.34294 -11.11352 -10.66547 -10.56147 -10.23527 -9.88410 -9.13159 -8.21443 -6.32848 -0.40999 0.34514 0.65446 0.79664 1.39835 1.42849 1.50751 1.67953 1.92518 2.40528 2.79458 3.11558 3.44373 3.76347 3.99125 4.06606 4.20399 4.42326 4.63189 4.66309 4.75316 4.86449 5.16257 5.19259 5.24850 5.49634 5.70171 5.83423 6.22916 6.70084 6.83975 7.36598 8.89882 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.066190 B = 0.003394 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.925639 B = 8246.942132 C = 8318.812363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.089 4.089 11 C -0.438 4.438 12 S 1.293 4.707 13 O -0.903 6.903 14 C -0.367 4.367 15 C -0.213 4.213 16 C 0.038 3.962 17 N -0.493 5.493 18 C 0.026 3.974 19 S 0.090 5.910 20 H 0.264 0.736 21 H -0.020 1.020 22 H 0.010 0.990 23 H 0.085 0.915 24 H 0.030 0.970 25 H 0.064 0.936 26 H 0.149 0.851 27 H 0.091 0.909 28 H 0.184 0.816 29 H 0.216 0.784 30 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 -21.752 4.491 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.575 4.575 12 S 1.495 4.505 13 O -0.898 6.898 14 C -0.505 4.505 15 C -0.335 4.335 16 C -0.114 4.114 17 N -0.206 5.206 18 C -0.271 4.271 19 S 0.342 5.658 20 H 0.073 0.927 21 H -0.002 1.002 22 H 0.028 0.972 23 H 0.103 0.897 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.167 0.833 27 H 0.110 0.890 28 H 0.201 0.799 29 H 0.233 0.767 30 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.475 -21.863 3.776 22.852 hybrid contribution -1.479 1.266 -1.528 2.474 sum 3.996 -20.597 2.248 21.102 Atomic orbital electron populations 1.70078 1.07752 1.27894 1.51585 1.25978 0.95800 1.03350 0.94642 0.85522 0.78334 0.78094 0.79259 1.19784 1.20723 1.18498 1.21743 0.93679 0.92607 1.50775 0.92193 1.19020 0.94320 0.92637 0.95127 1.21120 0.98026 0.92469 1.01189 1.27689 1.12006 1.09668 1.08141 1.70119 0.86153 0.84363 1.09868 1.93013 1.58862 1.84926 1.53050 1.26203 1.08500 1.05050 1.10781 1.25283 1.09256 1.03667 0.95339 1.22380 0.96621 0.91038 1.01389 1.66426 1.16820 1.17692 1.19636 1.28936 1.03562 1.03898 0.90713 1.84579 1.46880 1.21238 1.13101 0.92707 1.00158 0.97179 0.89651 0.95135 0.91684 0.83345 0.89048 0.79879 0.76727 0.75439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.43 4.97 29.85 0.15 1.57 16 10 C -0.09 -3.59 5.16 30.60 0.16 -3.43 16 11 C -0.44 -12.74 5.92 71.98 0.43 -12.31 16 12 S 1.29 29.76 13.14 -56.49 -0.74 29.02 16 13 O -0.90 -33.50 18.14 -148.98 -2.70 -36.20 16 14 C -0.37 -6.14 6.46 71.24 0.46 -5.68 16 15 C -0.21 -4.07 5.86 24.64 0.14 -3.93 16 16 C 0.04 0.64 11.25 83.66 0.94 1.58 16 17 N -0.49 -9.65 10.54 -203.75 -2.15 -11.79 16 18 C 0.03 0.45 12.23 130.65 1.60 2.04 16 19 S 0.09 1.84 23.22 -56.49 -1.31 0.53 16 20 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 21 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 22 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 23 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.18 1.41 8.14 -2.39 -0.02 1.40 16 29 H 0.22 1.95 8.06 -2.91 -0.02 1.92 16 30 H 0.23 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -81.13 292.91 1.10 -80.03 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: 1.13 Total: -0.44 kcal Atomic # 6 Polarization: -55.60 SS G_CDS: 4.57 Total: -51.03 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -1.86 Total: -68.30 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -2.70 Total: -36.20 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 31.61 SS G_CDS: -2.05 Total: 29.55 kcal Total: -81.13 1.10 -80.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118376900.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.665 kcal (2) G-P(sol) polarization free energy of solvation -81.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds