Wall clock time and date at job start Mon Mar 30 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47007 * 179.97438 * 11 10 9 13 13 O 1.42112 * 109.46676 * 63.61272 * 12 11 10 14 14 C 1.81393 * 103.00238 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47519 * 180.02562 * 14 12 11 16 16 C 1.33638 * 126.03576 * 89.99874 * 15 14 12 17 17 N 1.31785 * 114.49752 * 180.02562 * 16 15 14 18 18 C 1.29026 * 117.12831 * 0.02562 * 17 16 15 19 19 S 1.70982 * 110.16258 * 359.72155 * 18 17 16 20 20 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 22 22 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 23 23 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 24 24 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 25 25 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 26 26 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 27 27 H 1.08997 * 109.47504 * 300.00249 * 14 12 11 28 28 H 1.09001 * 109.46984 * 59.99943 * 14 12 11 29 29 H 1.08001 * 122.75389 * 0.02562 * 16 15 14 30 30 H 1.07991 * 124.91905 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 16 2.6589 -6.3659 0.0050 13 8 3.4202 -6.3378 1.2047 14 6 1.5807 -7.8246 0.0080 15 6 2.4246 -9.0732 0.0093 16 6 2.8657 -9.7229 1.0907 17 7 3.5890 -10.7928 0.8282 18 6 3.7831 -11.0814 -0.4143 19 16 2.9991 -9.9375 -1.4145 20 1 -0.4851 0.8400 -0.0004 21 1 0.6240 -2.5576 -0.8880 22 1 0.6247 -2.5563 0.8920 23 1 2.8719 -3.6036 0.8927 24 1 2.8719 -3.6052 -0.8873 25 1 0.8539 -5.0438 0.8948 26 1 0.8532 -5.0459 -0.8851 27 1 0.9525 -7.8103 0.8986 28 1 0.9506 -7.8125 -0.8813 29 1 2.6473 -9.3979 2.0972 30 1 4.3542 -11.9257 -0.7709 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118376901.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:10 Heat of formation + Delta-G solvation = -8.098647 kcal Electronic energy + Delta-G solvation = -14152.993117 eV Core-core repulsion = 11587.547895 eV Total energy + Delta-G solvation = -2565.445222 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80366 -35.57211 -34.47781 -32.92781 -32.06022 -27.87034 -27.38806 -24.62809 -23.38581 -20.56723 -20.18179 -18.33872 -17.43871 -16.36445 -15.93450 -15.52464 -14.89382 -14.54993 -14.34248 -14.17897 -14.15822 -13.61665 -13.10372 -12.46631 -12.28627 -12.01658 -11.53953 -11.41752 -10.89508 -10.85398 -10.76577 -10.43206 -9.90318 -9.83605 -9.67119 -9.34966 -9.20269 -8.89022 -8.37990 -8.06182 -6.03074 -4.05984 0.37212 1.06264 1.46637 1.61414 2.64507 2.73533 3.32493 3.36630 3.39612 3.83360 4.11166 4.44089 4.52032 4.78867 5.03575 5.32437 5.35752 5.40884 5.49564 5.53547 5.92861 6.12971 6.45540 6.64353 6.99626 7.46367 7.61966 7.74210 7.95841 8.37485 9.00692 9.58444 11.08152 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.063812 B = 0.003390 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.682385 B = 8257.980100 C = 8319.672173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.433 4.433 12 S 1.233 4.767 13 O -0.836 6.836 14 C -0.380 4.380 15 C -0.190 4.190 16 C 0.035 3.965 17 N -0.467 5.467 18 C 0.011 3.989 19 S 0.130 5.870 20 H 0.261 0.739 21 H 0.020 0.980 22 H 0.014 0.986 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.130 0.870 29 H 0.173 0.827 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -20.786 -6.785 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.572 4.572 12 S 1.432 4.568 13 O -0.831 6.831 14 C -0.516 4.516 15 C -0.312 4.312 16 C -0.117 4.117 17 N -0.180 5.180 18 C -0.287 4.287 19 S 0.382 5.618 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.033 0.967 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.148 0.852 29 H 0.190 0.810 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.842 -20.940 -7.421 22.737 hybrid contribution -1.243 1.131 2.728 3.204 sum 3.600 -19.809 -4.693 20.673 Atomic orbital electron populations 1.69950 1.06095 1.26801 1.50728 1.25025 0.94866 0.99319 0.95210 0.86633 0.79581 0.82955 0.78720 1.20092 1.21277 1.20218 1.21238 0.93138 0.91031 1.50858 0.92561 1.19092 0.93774 0.90860 0.97379 1.21332 0.99009 0.91758 1.01193 1.27681 1.11518 1.10635 1.07350 1.70792 0.87976 0.85339 1.12667 1.93133 1.55672 1.83592 1.50714 1.26319 1.09079 1.07424 1.08776 1.25188 1.07831 1.02662 0.95564 1.21800 0.97802 0.91714 1.00407 1.66318 1.15522 1.16785 1.19330 1.28394 1.04733 1.04295 0.91266 1.83945 1.46253 1.20742 1.10898 0.92901 0.96201 0.96723 0.92754 0.92032 0.89865 0.86654 0.87590 0.85176 0.80959 0.78336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.88 5.16 -26.73 -0.14 -2.02 16 11 C -0.43 -6.52 5.92 37.16 0.22 -6.30 16 12 S 1.23 15.33 13.14 -107.50 -1.41 13.92 16 13 O -0.84 -15.75 18.14 -35.23 -0.64 -16.39 16 14 C -0.38 -3.75 6.46 36.01 0.23 -3.51 16 15 C -0.19 -2.06 5.86 -35.92 -0.21 -2.27 16 16 C 0.03 0.44 11.25 -19.18 -0.22 0.22 16 17 N -0.47 -5.74 10.54 -15.75 -0.17 -5.90 16 18 C 0.01 0.10 12.23 51.58 0.63 0.73 16 19 S 0.13 1.04 23.22 -107.50 -2.50 -1.46 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.12 1.42 8.14 -51.92 -0.42 1.00 16 27 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.13 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.17 2.15 8.06 -52.49 -0.42 1.72 16 30 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -36.49 292.91 -8.38 -44.87 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -3.77 Total: -3.75 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -0.03 Total: -26.20 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.57 Total: -32.02 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.64 Total: -16.39 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 16.37 SS G_CDS: -3.91 Total: 12.46 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -36.49 -8.38 -44.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118376901.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.776 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds