Wall clock time and date at job start Mon Mar 30 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47007 * 179.97438 * 11 10 9 13 13 O 1.42112 * 109.46676 * 63.61272 * 12 11 10 14 14 C 1.81393 * 103.00238 * 179.97438 * 12 11 10 15 15 C 1.50701 * 109.47519 * 180.02562 * 14 12 11 16 16 C 1.33638 * 126.03576 * 89.99874 * 15 14 12 17 17 N 1.31785 * 114.49752 * 180.02562 * 16 15 14 18 18 C 1.29026 * 117.12831 * 0.02562 * 17 16 15 19 19 S 1.70982 * 110.16258 * 359.72155 * 18 17 16 20 20 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 22 22 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 23 23 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 24 24 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 25 25 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 26 26 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 27 27 H 1.08997 * 109.47504 * 300.00249 * 14 12 11 28 28 H 1.09001 * 109.46984 * 59.99943 * 14 12 11 29 29 H 1.08001 * 122.75389 * 0.02562 * 16 15 14 30 30 H 1.07991 * 124.91905 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 16 2.6589 -6.3659 0.0050 13 8 3.4202 -6.3378 1.2047 14 6 1.5807 -7.8246 0.0080 15 6 2.4246 -9.0732 0.0093 16 6 2.8657 -9.7229 1.0907 17 7 3.5890 -10.7928 0.8282 18 6 3.7831 -11.0814 -0.4143 19 16 2.9991 -9.9375 -1.4145 20 1 -0.4851 0.8400 -0.0004 21 1 0.6240 -2.5576 -0.8880 22 1 0.6247 -2.5563 0.8920 23 1 2.8719 -3.6036 0.8927 24 1 2.8719 -3.6052 -0.8873 25 1 0.8539 -5.0438 0.8948 26 1 0.8532 -5.0459 -0.8851 27 1 0.9525 -7.8103 0.8986 28 1 0.9506 -7.8125 -0.8813 29 1 2.6473 -9.3979 2.0972 30 1 4.3542 -11.9257 -0.7709 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118376901.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:09 Heat of formation + Delta-G solvation = -34.709537 kcal Electronic energy + Delta-G solvation = -14154.147052 eV Core-core repulsion = 11587.547895 eV Total energy + Delta-G solvation = -2566.599156 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.60063 -36.87881 -36.30960 -34.03131 -33.73835 -29.47804 -28.43553 -25.67144 -25.03129 -22.15734 -21.14166 -19.13336 -18.65839 -18.29904 -16.80160 -16.75905 -16.37466 -16.19607 -15.51139 -15.12338 -14.98730 -14.68731 -14.37246 -14.03793 -13.77143 -13.52749 -13.07210 -12.68721 -12.57912 -12.51632 -12.21415 -11.93959 -11.60622 -11.35106 -11.13883 -10.64121 -10.56133 -10.12310 -9.93899 -9.16726 -8.21391 -6.32811 -0.41783 0.34204 0.62907 0.74300 1.39938 1.42939 1.50842 1.65308 1.86611 2.40582 2.77526 3.11632 3.39840 3.70899 4.01012 4.06096 4.18665 4.34733 4.58169 4.62458 4.74076 4.85497 5.09729 5.15105 5.18557 5.49448 5.69871 5.83233 6.22828 6.71176 6.83913 7.36635 8.89928 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.063812 B = 0.003390 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.682385 B = 8257.980100 C = 8319.672173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.090 4.090 11 C -0.437 4.437 12 S 1.292 4.708 13 O -0.905 6.905 14 C -0.369 4.369 15 C -0.216 4.216 16 C 0.012 3.988 17 N -0.507 5.507 18 C 0.010 3.990 19 S 0.207 5.793 20 H 0.264 0.736 21 H 0.010 0.990 22 H -0.020 1.020 23 H 0.030 0.970 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.149 0.851 27 H 0.102 0.898 28 H 0.173 0.827 29 H 0.156 0.844 30 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -21.802 -9.079 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.129 4.129 11 C -0.575 4.575 12 S 1.493 4.507 13 O -0.900 6.900 14 C -0.508 4.508 15 C -0.339 4.339 16 C -0.141 4.141 17 N -0.221 5.221 18 C -0.287 4.287 19 S 0.459 5.541 20 H 0.073 0.927 21 H 0.029 0.971 22 H -0.001 1.001 23 H 0.048 0.952 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.167 0.833 27 H 0.120 0.880 28 H 0.191 0.809 29 H 0.174 0.826 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.475 -21.925 -9.728 24.603 hybrid contribution -1.472 1.270 3.366 3.887 sum 4.004 -20.655 -6.363 21.981 Atomic orbital electron populations 1.70076 1.07748 1.27901 1.51573 1.25974 0.95800 1.03344 0.94638 0.85521 0.78334 0.78096 0.79257 1.18474 1.20723 1.19815 1.21741 0.93684 0.92598 1.50793 0.92186 1.19021 0.94307 0.92593 0.95175 1.21131 0.98059 0.92439 1.01231 1.27678 1.11956 1.09532 1.08289 1.69962 0.86272 0.84499 1.09957 1.93020 1.58933 1.84968 1.53123 1.26184 1.08596 1.05132 1.10862 1.25356 1.08272 1.03171 0.97069 1.21794 0.98953 0.92779 1.00597 1.66323 1.16997 1.17482 1.21340 1.29076 1.03818 1.05123 0.90716 1.83652 1.44152 1.18493 1.07780 0.92702 0.97114 1.00124 0.95153 0.89567 0.91476 0.83264 0.87953 0.80935 0.82635 0.74940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.35 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.62 5.16 30.60 0.16 -3.46 16 11 C -0.44 -12.82 5.92 71.98 0.43 -12.39 16 12 S 1.29 30.56 13.14 -56.49 -0.74 29.82 16 13 O -0.90 -34.65 18.14 -148.98 -2.70 -37.36 16 14 C -0.37 -6.42 6.46 71.24 0.46 -5.96 16 15 C -0.22 -4.26 5.86 24.64 0.14 -4.12 16 16 C 0.01 0.29 11.25 83.66 0.94 1.23 16 17 N -0.51 -12.06 10.54 -203.75 -2.15 -14.21 16 18 C 0.01 0.14 12.23 130.65 1.60 1.74 16 19 S 0.21 2.57 23.22 -56.49 -1.31 1.25 16 20 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 21 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 22 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 23 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.15 3.30 8.14 -2.39 -0.02 3.28 16 27 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.23 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -82.21 292.91 1.10 -81.11 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.13 Total: 1.72 kcal Atomic # 6 Polarization: -56.83 SS G_CDS: 4.57 Total: -52.26 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -1.86 Total: -70.67 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -2.70 Total: -37.36 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 33.12 SS G_CDS: -2.05 Total: 31.07 kcal Total: -82.21 1.10 -81.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118376901.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.398 kcal (2) G-P(sol) polarization free energy of solvation -82.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds