Wall clock time and date at job start Mon Mar 30 2020 06:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48500 * 109.47212 * 270.00616 * 3 2 1 5 5 H 1.48500 * 109.46792 * 30.00680 * 3 2 1 6 6 H 1.48498 * 109.47061 * 150.00623 * 3 2 1 7 7 C 1.38888 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00378 * 183.09840 * 7 2 1 9 9 N 1.37141 * 120.00021 * 3.10596 * 7 2 1 10 10 C 1.34778 * 120.00414 * 126.55849 * 9 7 2 11 11 O 1.21281 * 119.99740 * 183.87599 * 10 9 7 12 12 C 1.50697 * 119.99920 * 3.87778 * 10 9 7 13 13 F 1.39900 * 109.47085 * 175.50147 * 12 10 9 14 14 F 1.39899 * 109.47022 * 295.50410 * 12 10 9 15 15 F 1.39898 * 109.46813 * 55.50284 * 12 10 9 16 16 C 1.39795 * 119.99589 * 306.56077 * 9 7 2 17 17 C 1.38965 * 120.07471 * 171.68074 * 16 9 7 18 18 C 1.38079 * 119.91678 * 179.97438 * 17 16 9 19 19 C 1.38312 * 120.08239 * 359.97438 * 18 17 16 20 20 C 1.38309 * 120.15427 * 0.02562 * 19 18 17 21 21 C 1.38085 * 120.07655 * 359.97438 * 20 19 18 22 22 H 0.97002 * 120.00230 * 4.99583 * 1 2 3 23 23 H 1.08000 * 120.03802 * 359.70292 * 17 16 9 24 24 H 1.08004 * 119.95653 * 179.97438 * 18 17 16 25 25 H 1.07995 * 119.92090 * 179.97438 * 19 18 17 26 26 H 1.07997 * 119.96249 * 180.02562 * 20 19 18 27 27 H 1.08005 * 120.03800 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0466 -1.4001 5 1 1.4456 2.6526 0.7002 6 1 3.5458 1.4402 0.6999 7 6 2.0087 -1.2028 -0.0005 8 1 3.0875 -1.2035 0.0500 9 7 1.3246 -2.3896 -0.0654 10 6 1.6340 -3.2949 -1.0148 11 8 0.9832 -4.3132 -1.1166 12 6 2.7886 -3.0417 -1.9496 13 9 2.9767 -4.1582 -2.7713 14 9 2.5111 -1.9217 -2.7407 15 9 3.9497 -2.8101 -1.2044 16 6 0.3062 -2.6603 0.8532 17 6 -0.5022 -3.7784 0.6872 18 6 -1.5068 -4.0430 1.5968 19 6 -1.7087 -3.1972 2.6723 20 6 -0.9059 -2.0835 2.8406 21 6 0.1006 -1.8127 1.9349 22 1 -0.4850 0.8368 -0.0732 23 1 -0.3477 -4.4371 -0.1547 24 1 -2.1358 -4.9116 1.4681 25 1 -2.4954 -3.4064 3.3819 26 1 -1.0660 -1.4254 3.6818 27 1 0.7268 -0.9427 2.0667 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001616046145.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:01 Heat of formation + Delta-G solvation = -148.347918 kcal Electronic energy + Delta-G solvation = -19972.225196 eV Core-core repulsion = 16280.644747 eV Total energy + Delta-G solvation = -3691.580449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.19754 -48.73753 -48.63727 -41.66048 -39.06268 -37.10943 -33.99891 -31.48641 -31.11106 -28.41919 -27.08634 -23.83472 -23.12181 -22.00982 -20.38441 -19.71386 -19.63081 -18.50157 -17.54889 -17.45722 -16.90302 -16.10848 -15.79946 -15.51769 -15.35695 -15.09744 -14.97900 -14.85013 -14.82083 -14.78157 -14.36722 -13.85685 -13.84760 -13.43014 -13.17218 -12.72219 -12.57182 -12.11975 -11.80581 -11.23352 -10.73187 -10.40017 -9.57007 -8.89011 -8.33103 -6.61297 0.31937 0.78227 1.20190 1.31382 1.44466 1.53780 1.57037 2.16297 2.34462 2.79804 2.93908 3.20986 3.35771 3.43171 4.27980 4.32375 4.55288 4.84827 4.91049 4.94968 5.25373 5.35424 5.66376 5.74411 5.77160 5.88519 6.12983 6.44344 6.72709 6.94165 7.33878 8.50168 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.012623 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.638366 B = 2217.632729 C = 3586.479691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.031 3.969 3 Si 0.984 3.016 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.408 4.408 8 H 0.111 0.889 9 N -0.353 5.353 10 C 0.423 3.577 11 O -0.541 6.541 12 C 0.476 3.524 13 F -0.165 7.165 14 F -0.164 7.164 15 F -0.167 7.167 16 C 0.142 3.858 17 C -0.202 4.202 18 C -0.121 4.121 19 C -0.148 4.148 20 C -0.124 4.124 21 C -0.092 4.092 22 H 0.281 0.719 23 H 0.154 0.846 24 H 0.139 0.861 25 H 0.147 0.853 26 H 0.138 0.862 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 -0.571 2.340 2.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.534 4.534 8 H 0.128 0.872 9 N -0.060 5.060 10 C 0.209 3.791 11 O -0.425 6.425 12 C 0.419 3.581 13 F -0.147 7.147 14 F -0.146 7.146 15 F -0.149 7.149 16 C 0.048 3.952 17 C -0.221 4.221 18 C -0.140 4.140 19 C -0.167 4.167 20 C -0.143 4.143 21 C -0.113 4.113 22 H 0.091 0.909 23 H 0.171 0.829 24 H 0.157 0.843 25 H 0.164 0.836 26 H 0.156 0.844 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.927 -0.900 2.310 2.647 hybrid contribution 0.524 0.928 -0.509 1.181 sum 1.452 0.028 1.802 2.314 Atomic orbital electron populations 1.70092 1.07537 1.30019 1.41566 1.26392 0.96061 1.02954 0.92372 0.85061 0.78890 0.76352 0.79200 1.19426 1.19677 1.17671 1.20036 0.92883 0.81545 1.58906 0.87171 1.41114 1.28633 1.15096 1.21186 1.21072 0.87469 0.86822 0.83784 1.90354 1.51492 1.29668 1.70961 1.19691 0.83417 0.74362 0.80654 1.93173 1.95480 1.52560 1.73475 1.93208 1.93549 1.52632 1.75188 1.93168 1.51151 1.94315 1.76244 1.18446 0.91131 0.95377 0.90265 1.22568 0.97239 0.99052 1.03226 1.21224 0.97387 1.00456 0.94887 1.21309 1.00891 0.95432 0.99050 1.21159 0.95554 0.98281 0.99275 1.20814 0.99377 0.97977 0.93098 0.90902 0.82904 0.84302 0.83555 0.84384 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.14 10.90 21.65 0.24 -42.91 15 2 C 0.03 1.48 4.13 84.91 0.35 1.83 15 3 Si 0.98 37.05 29.56 68.60 2.03 39.08 15 4 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 15 6 H -0.25 -9.08 7.11 99.48 0.71 -8.38 15 7 C -0.41 -19.85 6.84 84.02 0.57 -19.28 15 8 H 0.11 5.16 6.42 -2.91 -0.02 5.14 15 9 N -0.35 -17.78 2.70 -458.89 -1.24 -19.02 15 10 C 0.42 20.58 7.16 87.66 0.63 21.21 15 11 O -0.54 -27.24 13.03 -3.03 -0.04 -27.27 15 12 C 0.48 20.34 2.88 71.24 0.20 20.55 15 13 F -0.17 -6.59 16.93 44.97 0.76 -5.83 15 14 F -0.16 -7.09 16.59 44.97 0.75 -6.34 15 15 F -0.17 -6.73 15.50 44.97 0.70 -6.03 15 16 C 0.14 6.99 5.70 38.22 0.22 7.20 15 17 C -0.20 -9.29 9.03 22.41 0.20 -9.09 15 18 C -0.12 -4.56 10.04 22.25 0.22 -4.33 15 19 C -0.15 -5.06 10.04 22.30 0.22 -4.83 15 20 C -0.12 -4.64 10.04 22.25 0.22 -4.41 15 21 C -0.09 -4.18 7.55 22.41 0.17 -4.01 15 22 H 0.28 13.24 8.32 -92.71 -0.77 12.46 15 23 H 0.15 7.48 4.58 -58.57 -0.27 7.21 15 24 H 0.14 4.28 8.06 -2.91 -0.02 4.25 15 25 H 0.15 3.76 8.06 -2.91 -0.02 3.74 15 26 H 0.14 4.24 8.06 -2.91 -0.02 4.21 15 27 H 0.11 5.40 5.92 -2.91 -0.02 5.38 15 Total: -1.00 -55.30 249.33 7.18 -48.12 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.98 Total: 15.37 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 3.02 Total: 4.84 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -1.00 Total: -61.93 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.04 Total: -27.27 kcal Atomic # 9 Polarization: -20.40 SS G_CDS: 2.20 Total: -18.20 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -55.30 7.18 -48.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616046145.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.231 kcal (2) G-P(sol) polarization free energy of solvation -55.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds