Wall clock time and date at job start Mon Mar 30 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38367 * 119.85215 * 269.72829 * 3 2 1 5 5 C 1.37943 * 120.14912 * 179.76405 * 4 3 2 6 6 C 1.39618 * 119.84758 * 0.50728 * 5 4 3 7 7 C 1.47767 * 120.14467 * 179.72529 * 6 5 4 8 8 N 1.29843 * 125.06827 * 359.74224 * 7 6 5 9 9 C 1.32762 * 116.00760 * 179.82296 * 8 7 6 10 10 C 1.41156 * 122.77106 * 180.21773 * 9 8 7 11 11 H 1.08001 * 120.00006 * 180.26428 * 10 9 8 12 12 C 1.39658 * 120.00187 * 0.26320 * 10 9 8 13 13 N 1.31054 * 119.99687 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00175 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46834 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47085 * 120.00021 * 14 12 10 17 17 H 1.48502 * 109.46976 * 240.00365 * 14 12 10 18 18 C 1.37988 * 114.45463 * 0.46369 * 9 8 7 19 19 S 1.70996 * 108.89069 * 359.75484 * 18 9 8 20 20 C 1.39615 * 119.70760 * 359.74433 * 6 5 4 21 21 C 1.37942 * 119.84698 * 0.02562 * 20 6 5 22 22 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 27 27 H 1.08003 * 119.92466 * 0.02562 * 4 3 2 28 28 H 1.08004 * 120.07673 * 180.25098 * 5 4 3 29 29 H 0.97000 * 119.99560 * 179.97438 * 13 12 10 30 30 H 1.08006 * 125.55171 * 179.77691 * 18 9 8 31 31 H 1.07999 * 120.07991 * 179.97438 * 20 6 5 32 32 H 1.08002 * 119.92824 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2674 2.0682 -1.2001 5 6 2.7226 3.3703 -1.2072 6 6 2.9564 4.0313 0.0001 7 6 3.4499 5.4242 0.0001 8 7 3.7039 6.1256 -1.0627 9 6 4.1374 7.3630 -0.8536 10 6 4.4518 8.2503 -1.9054 11 1 4.8052 9.2465 -1.6840 12 6 4.3060 7.8399 -3.2324 13 7 3.8767 6.6312 -3.5010 14 14 4.7229 9.0140 -4.6243 15 1 5.1831 10.3079 -4.0593 16 1 5.8013 8.4278 -5.4600 17 1 3.5161 9.2393 -5.4599 18 6 4.2601 7.7081 0.4767 19 16 3.7881 6.3765 1.4400 20 6 2.7222 3.3704 1.2074 21 6 2.2624 2.0699 1.2002 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.0899 1.5543 -2.1333 28 1 2.9018 3.8759 -2.1447 29 1 3.7751 6.3463 -4.4227 30 1 4.5988 8.6638 0.8489 31 1 2.9014 3.8759 2.1448 32 1 2.0812 1.5573 2.1334 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061798185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:34 Heat of formation + Delta-G solvation = 30.131040 kcal Electronic energy + Delta-G solvation = -15965.392927 eV Core-core repulsion = 13401.994612 eV Total energy + Delta-G solvation = -2563.398315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46695 -39.46874 -35.55439 -34.80089 -31.89275 -31.81017 -29.69684 -27.63474 -25.81009 -23.64535 -23.54497 -21.80009 -20.64213 -19.39750 -17.77994 -17.06330 -16.62158 -16.14399 -16.05426 -15.18175 -15.04240 -14.60094 -14.50552 -14.22399 -14.06497 -13.56253 -13.46201 -13.11339 -12.93682 -12.68158 -12.58722 -12.28462 -12.06681 -11.80010 -11.61097 -11.54103 -11.26663 -10.31036 -10.01409 -9.85328 -9.70179 -8.85800 -8.49090 -6.44478 -0.29626 0.52401 0.86995 0.97291 1.35441 1.40112 1.51699 1.66599 2.21241 2.32965 2.93475 3.46573 3.47702 3.92660 4.00172 4.15356 4.38591 4.51843 4.60034 4.66349 4.75558 4.78518 5.02855 5.09701 5.14628 5.16478 5.21098 5.27710 5.39409 5.47992 5.57657 5.68817 5.73576 6.09138 6.13462 6.50029 6.83373 7.62389 8.40708 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024763 B = 0.005623 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.428878 B = 4978.237487 C = 6011.430722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.073 4.073 4 C -0.121 4.121 5 C -0.091 4.091 6 C -0.042 4.042 7 C 0.074 3.926 8 N -0.432 5.432 9 C 0.196 3.804 10 C -0.472 4.472 11 H 0.084 0.916 12 C 0.027 3.973 13 N -0.784 5.784 14 Si 0.993 3.007 15 H -0.257 1.257 16 H -0.264 1.264 17 H -0.264 1.264 18 C -0.487 4.487 19 S 0.049 5.951 20 C -0.104 4.104 21 C -0.113 4.113 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.108 0.892 29 H 0.281 0.719 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 -12.950 4.583 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.074 4.074 4 C -0.139 4.139 5 C -0.113 4.113 6 C -0.046 4.046 7 C -0.204 4.204 8 N -0.148 5.148 9 C 0.072 3.928 10 C -0.506 4.506 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.408 5.408 14 Si 0.813 3.187 15 H -0.181 1.181 16 H -0.189 1.189 17 H -0.188 1.188 18 C -0.626 4.626 19 S 0.300 5.700 20 C -0.124 4.124 21 C -0.131 4.131 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.159 0.841 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.195 -13.395 4.960 15.199 hybrid contribution 0.663 1.922 -1.390 2.463 sum -4.532 -11.472 3.570 12.841 Atomic orbital electron populations 1.21752 0.94152 1.02559 1.01868 1.20611 0.96488 0.90379 1.04234 1.20378 0.97119 0.97621 0.92278 1.21167 1.00120 0.93331 0.99312 1.21329 0.97576 0.95305 0.97075 1.18218 1.02172 0.88700 0.95513 1.26693 1.03898 0.98953 0.90844 1.67435 1.13347 1.05911 1.28061 1.18345 0.93226 0.88938 0.92299 1.19345 1.41244 0.99566 0.90476 0.89790 1.26928 0.92589 0.97343 1.02376 1.70220 1.30810 1.18250 1.21479 0.85002 0.78871 0.78375 0.76457 1.18065 1.18854 1.18845 1.25621 1.35180 1.05705 0.96100 1.81903 1.67203 1.07415 1.13468 1.21313 0.99285 0.95916 0.95875 1.21200 0.99429 0.93294 0.99170 0.93487 0.92663 0.90631 0.89122 0.90079 0.84069 0.87414 0.90902 0.84015 0.85143 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.89 71.98 0.71 -1.46 16 2 C -0.08 -1.29 6.06 29.85 0.18 -1.11 16 3 C -0.07 -1.77 5.14 -19.80 -0.10 -1.87 16 4 C -0.12 -3.60 9.68 22.23 0.22 -3.39 16 5 C -0.09 -3.62 9.67 22.53 0.22 -3.40 16 6 C -0.04 -1.75 5.87 -20.09 -0.12 -1.87 16 7 C 0.07 3.73 7.30 87.51 0.64 4.37 16 8 N -0.43 -25.10 7.98 -182.92 -1.46 -26.56 16 9 C 0.20 11.70 6.45 39.66 0.26 11.96 16 10 C -0.47 -27.58 9.23 23.33 0.22 -27.36 16 11 H 0.08 4.68 7.84 -2.91 -0.02 4.66 16 12 C 0.03 1.44 5.49 85.15 0.47 1.91 16 13 N -0.78 -43.92 11.69 21.78 0.25 -43.66 16 14 Si 0.99 40.25 29.56 68.60 2.03 42.28 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 16 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 18 C -0.49 -26.36 10.99 67.76 0.74 -25.61 16 19 S 0.05 2.21 22.07 -56.49 -1.25 0.97 16 20 C -0.10 -3.36 9.60 22.53 0.22 -3.14 16 21 C -0.11 -2.82 9.68 22.23 0.22 -2.61 16 22 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.09 1.14 8.08 -2.39 -0.02 1.13 16 26 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 27 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.11 4.98 7.80 -2.91 -0.02 4.95 16 29 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 30 H 0.14 7.30 8.06 -2.91 -0.02 7.28 16 31 H 0.13 3.92 7.27 -2.91 -0.02 3.90 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -68.48 293.66 4.55 -63.92 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.12 Total: 16.64 kcal Atomic # 6 Polarization: -57.45 SS G_CDS: 3.86 Total: -53.59 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.21 Total: -70.22 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.25 Total: 0.97 kcal Total: -68.48 4.55 -63.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.054 kcal (2) G-P(sol) polarization free energy of solvation -68.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds