Wall clock time and date at job start Mon Mar 30 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47017 * 2 1 4 4 S 1.70583 * 124.80322 * 269.69968 * 3 2 1 5 5 C 1.75621 * 92.00472 * 179.97438 * 4 3 2 6 6 C 1.47708 * 124.87766 * 180.09962 * 5 4 3 7 7 C 1.39626 * 119.75173 * 359.97438 * 6 5 4 8 8 C 1.38305 * 119.05225 * 179.79353 * 7 6 5 9 9 C 1.38866 * 118.53086 * 0.47424 * 8 7 6 10 10 C 1.38251 * 119.41676 * 359.74363 * 9 8 7 11 11 N 1.31743 * 120.92467 * 0.02762 * 10 9 8 12 12 C 1.34160 * 110.24916 * 0.31800 * 5 4 3 13 13 C 1.37793 * 124.80337 * 90.00281 * 3 2 1 14 14 C 1.41335 * 123.18935 * 359.97438 * 13 3 2 15 15 H 1.08000 * 120.00290 * 339.17221 * 14 13 3 16 16 C 1.39633 * 119.99972 * 159.17335 * 14 13 3 17 17 N 1.31085 * 119.99791 * 345.06801 * 16 14 13 18 18 Si 1.86802 * 120.00257 * 165.07492 * 16 14 13 19 19 H 1.48502 * 109.47080 * 94.76606 * 18 16 14 20 20 H 1.48498 * 109.46956 * 214.77227 * 18 16 14 21 21 H 1.48506 * 109.46688 * 334.76733 * 18 16 14 22 22 H 1.08994 * 109.47543 * 59.99616 * 1 2 3 23 23 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47247 * 299.99583 * 1 2 3 25 25 H 1.08994 * 109.47543 * 120.00384 * 2 1 3 26 26 H 1.09003 * 109.46789 * 240.00154 * 2 1 3 27 27 H 1.08006 * 120.47950 * 0.02562 * 7 6 5 28 28 H 1.07994 * 120.73185 * 180.19996 * 8 7 6 29 29 H 1.08000 * 120.28847 * 179.72568 * 9 8 7 30 30 H 1.08005 * 119.54136 * 179.97438 * 10 9 8 31 31 H 1.08000 * 123.13324 * 179.78174 * 12 5 4 32 32 H 0.97000 * 119.99846 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3637 2.3363 -1.4007 5 6 2.8503 3.7301 -0.4494 6 6 3.3062 5.0181 -1.0104 7 6 3.3719 5.1863 -2.3950 8 6 3.7967 6.3998 -2.9047 9 6 4.1524 7.4050 -2.0150 10 6 4.0680 7.1695 -0.6553 11 7 3.6559 6.0063 -0.1939 12 6 2.7531 3.4553 0.8602 13 6 2.2945 2.1623 1.1314 14 6 2.1175 1.6631 2.4418 15 1 1.4660 0.8193 2.6149 16 6 2.7850 2.2609 3.5127 17 7 3.7851 3.0779 3.2878 18 14 2.2528 1.8964 5.2658 19 1 3.0836 0.7957 5.8166 20 1 2.4273 3.1131 6.0992 21 1 0.8242 1.4907 5.2752 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.0915 4.3816 -3.0585 28 1 3.8548 6.5606 -3.9710 29 1 4.4923 8.3621 -2.3820 30 1 4.3445 7.9496 0.0385 31 1 3.0048 4.1666 1.6329 32 1 4.2485 3.4935 4.0317 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077097847.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:43 Heat of formation + Delta-G solvation = 41.715738 kcal Electronic energy + Delta-G solvation = -16209.120437 eV Core-core repulsion = 13646.224473 eV Total energy + Delta-G solvation = -2562.895964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56419 -36.85862 -33.08754 -33.00483 -31.97559 -30.81088 -27.69717 -25.54206 -23.78159 -23.06836 -21.48814 -20.58359 -18.70092 -16.68246 -16.18548 -15.54731 -15.37317 -15.15355 -14.52181 -13.66156 -13.60741 -13.19455 -12.88327 -12.79623 -12.37999 -11.81503 -11.61697 -11.48342 -11.22758 -11.05428 -10.88679 -10.62747 -10.36951 -10.04571 -9.81029 -9.57529 -9.43821 -9.10351 -8.91830 -8.72908 -7.11731 -6.97825 -6.66389 -4.25504 1.22318 1.65261 2.61899 2.97349 3.04492 3.10738 3.16120 3.69271 3.99516 4.05104 4.48087 4.87319 5.07739 5.19283 5.35167 5.41109 5.52744 5.96506 6.00239 6.02904 6.11007 6.32243 6.35987 6.50564 6.58231 6.76283 6.97632 7.06169 7.11646 7.16204 7.31674 7.49236 7.69033 8.03640 8.45469 8.48731 8.79113 8.94285 10.26034 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.007568 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.795950 B = 3698.973697 C = 5065.751448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.010 4.010 3 C -0.363 4.363 4 S 0.039 5.961 5 C -0.213 4.213 6 C 0.237 3.763 7 C -0.181 4.181 8 C -0.072 4.072 9 C -0.206 4.206 10 C 0.107 3.893 11 N -0.479 5.479 12 C -0.021 4.021 13 C 0.078 3.922 14 C -0.435 4.435 15 H 0.079 0.921 16 C 0.072 3.928 17 N -0.803 5.803 18 Si 0.909 3.091 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.262 1.262 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 4.074 -6.649 7.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 C -0.481 4.481 4 S 0.302 5.698 5 C -0.328 4.328 6 C 0.100 3.900 7 C -0.202 4.202 8 C -0.097 4.097 9 C -0.226 4.226 10 C -0.051 4.051 11 N -0.188 5.188 12 C -0.056 4.056 13 C 0.068 3.932 14 C -0.469 4.469 15 H 0.097 0.903 16 C -0.145 4.145 17 N -0.431 5.431 18 Si 0.734 3.266 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.186 1.186 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.523 3.778 -7.183 8.133 hybrid contribution 0.089 0.401 1.471 1.527 sum -0.434 4.179 -5.712 7.091 Atomic orbital electron populations 1.21778 0.97202 0.99346 1.01599 1.19379 0.93739 0.91773 1.00111 1.23270 1.29274 1.00974 0.94578 1.81570 1.70636 1.05969 1.11638 1.22147 1.17426 0.95758 0.97511 1.19234 0.90890 0.91009 0.88823 1.22058 1.03657 0.98585 0.95872 1.21378 0.95738 0.92782 0.99828 1.21998 1.05326 1.00360 0.94916 1.22691 0.94696 0.94150 0.93604 1.67825 1.11197 1.00187 1.39602 1.21158 0.92944 0.97441 0.94094 1.16746 0.92957 0.90293 0.93239 1.19089 1.23943 1.13890 0.89996 0.90267 1.25897 0.93332 0.93625 1.01636 1.69864 1.15271 1.23842 1.34074 0.86274 0.80199 0.78656 0.81450 1.19686 1.20140 1.18560 0.93735 0.94363 0.92614 0.91673 0.94082 0.85121 0.85388 0.85533 0.83219 0.82720 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.89 37.16 0.37 -2.23 16 2 C -0.01 -0.22 5.97 -27.88 -0.17 -0.38 16 3 C -0.36 -8.67 5.66 -34.47 -0.20 -8.86 16 4 S 0.04 0.84 21.85 -107.50 -2.35 -1.51 16 5 C -0.21 -5.03 6.33 -37.15 -0.24 -5.26 16 6 C 0.24 5.01 6.74 -83.03 -0.56 4.45 16 7 C -0.18 -3.16 9.62 -39.04 -0.38 -3.54 16 8 C -0.07 -1.02 10.16 -39.32 -0.40 -1.42 16 9 C -0.21 -2.81 10.11 -39.34 -0.40 -3.21 16 10 C 0.11 1.73 11.17 -17.58 -0.20 1.54 16 11 N -0.48 -9.93 9.92 -9.86 -0.10 -10.03 16 12 C -0.02 -0.56 8.53 -40.42 -0.34 -0.90 16 13 C 0.08 2.04 5.53 -108.28 -0.60 1.45 16 14 C -0.44 -11.42 8.61 -37.88 -0.33 -11.75 16 15 H 0.08 2.01 7.28 -52.49 -0.38 1.62 16 16 C 0.07 1.81 5.32 -17.35 -0.09 1.72 16 17 N -0.80 -20.97 10.87 55.53 0.60 -20.37 16 18 Si 0.91 18.92 29.58 -169.99 -5.03 13.89 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.06 1.39 7.36 -51.93 -0.38 1.01 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.13 2.13 7.24 -52.48 -0.38 1.75 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.16 4.28 6.21 -52.49 -0.33 3.95 16 32 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 LS Contribution 290.32 15.07 4.38 4.38 Total: -1.00 -28.29 290.32 -9.58 -37.87 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -3.56 Total: 4.18 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -3.52 Total: -28.40 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.51 Total: -30.40 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.35 Total: -1.51 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.29 -9.58 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077097847.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.584 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds