Wall clock time and date at job start Mon Mar 30 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47017 * 2 1 4 4 S 1.70583 * 124.80322 * 269.69968 * 3 2 1 5 5 C 1.75621 * 92.00472 * 179.97438 * 4 3 2 6 6 C 1.47708 * 124.87766 * 180.09962 * 5 4 3 7 7 C 1.39626 * 119.75173 * 359.97438 * 6 5 4 8 8 C 1.38305 * 119.05225 * 179.79353 * 7 6 5 9 9 C 1.38866 * 118.53086 * 0.47424 * 8 7 6 10 10 C 1.38251 * 119.41676 * 359.74363 * 9 8 7 11 11 N 1.31743 * 120.92467 * 0.02762 * 10 9 8 12 12 C 1.34160 * 110.24916 * 0.31800 * 5 4 3 13 13 C 1.37793 * 124.80337 * 90.00281 * 3 2 1 14 14 C 1.41335 * 123.18935 * 359.97438 * 13 3 2 15 15 H 1.08000 * 120.00290 * 339.17221 * 14 13 3 16 16 C 1.39633 * 119.99972 * 159.17335 * 14 13 3 17 17 N 1.31085 * 119.99791 * 345.06801 * 16 14 13 18 18 Si 1.86802 * 120.00257 * 165.07492 * 16 14 13 19 19 H 1.48502 * 109.47080 * 94.76606 * 18 16 14 20 20 H 1.48498 * 109.46956 * 214.77227 * 18 16 14 21 21 H 1.48506 * 109.46688 * 334.76733 * 18 16 14 22 22 H 1.08994 * 109.47543 * 59.99616 * 1 2 3 23 23 H 1.08998 * 109.47179 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47247 * 299.99583 * 1 2 3 25 25 H 1.08994 * 109.47543 * 120.00384 * 2 1 3 26 26 H 1.09003 * 109.46789 * 240.00154 * 2 1 3 27 27 H 1.08006 * 120.47950 * 0.02562 * 7 6 5 28 28 H 1.07994 * 120.73185 * 180.19996 * 8 7 6 29 29 H 1.08000 * 120.28847 * 179.72568 * 9 8 7 30 30 H 1.08005 * 119.54136 * 179.97438 * 10 9 8 31 31 H 1.08000 * 123.13324 * 179.78174 * 12 5 4 32 32 H 0.97000 * 119.99846 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3637 2.3363 -1.4007 5 6 2.8503 3.7301 -0.4494 6 6 3.3062 5.0181 -1.0104 7 6 3.3719 5.1863 -2.3950 8 6 3.7967 6.3998 -2.9047 9 6 4.1524 7.4050 -2.0150 10 6 4.0680 7.1695 -0.6553 11 7 3.6559 6.0063 -0.1939 12 6 2.7531 3.4553 0.8602 13 6 2.2945 2.1623 1.1314 14 6 2.1175 1.6631 2.4418 15 1 1.4660 0.8193 2.6149 16 6 2.7850 2.2609 3.5127 17 7 3.7851 3.0779 3.2878 18 14 2.2528 1.8964 5.2658 19 1 3.0836 0.7957 5.8166 20 1 2.4273 3.1131 6.0992 21 1 0.8242 1.4907 5.2752 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.0915 4.3816 -3.0585 28 1 3.8548 6.5606 -3.9710 29 1 4.4923 8.3621 -2.3820 30 1 4.3445 7.9496 0.0385 31 1 3.0048 4.1666 1.6329 32 1 4.2485 3.4935 4.0317 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077097847.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:42 Heat of formation + Delta-G solvation = 26.849550 kcal Electronic energy + Delta-G solvation = -16209.765084 eV Core-core repulsion = 13646.224473 eV Total energy + Delta-G solvation = -2563.540611 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.90206 -38.66496 -34.86606 -34.64723 -33.29092 -32.28610 -29.42108 -27.31842 -25.30326 -24.37778 -23.08061 -22.30133 -20.44838 -18.21921 -17.81877 -17.25233 -16.80056 -16.65962 -16.06236 -15.24151 -15.06584 -14.82698 -14.38273 -14.20033 -13.86615 -13.55694 -13.31805 -12.97491 -12.80109 -12.71604 -12.53637 -12.30666 -12.04360 -11.79206 -11.55677 -11.24289 -10.90323 -10.81055 -10.28385 -10.24172 -8.94046 -8.74073 -8.47920 -6.19083 -0.24340 0.41500 0.95669 1.20293 1.36585 1.40382 1.52211 1.85046 2.21818 2.28839 3.03621 3.43239 3.53658 3.88521 4.05766 4.25656 4.27455 4.40932 4.46718 4.72185 4.73996 4.86036 4.99101 5.08583 5.17229 5.26256 5.27747 5.40015 5.46882 5.54044 5.61960 5.76817 5.90543 6.13951 6.51182 6.88852 7.02429 7.17162 8.42384 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.007568 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.795950 B = 3698.973697 C = 5065.751448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.013 4.013 3 C -0.378 4.378 4 S 0.101 5.899 5 C -0.212 4.212 6 C 0.188 3.812 7 C -0.182 4.182 8 C -0.064 4.064 9 C -0.177 4.177 10 C 0.088 3.912 11 N -0.522 5.522 12 C -0.069 4.069 13 C 0.046 3.954 14 C -0.469 4.469 15 H 0.076 0.924 16 C 0.029 3.971 17 N -0.839 5.839 18 Si 0.980 3.020 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.259 1.259 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.139 0.861 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.175 0.825 31 H 0.128 0.872 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 5.077 -8.941 10.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.053 4.053 3 C -0.496 4.496 4 S 0.365 5.635 5 C -0.328 4.328 6 C 0.052 3.948 7 C -0.203 4.203 8 C -0.089 4.089 9 C -0.196 4.196 10 C -0.070 4.070 11 N -0.232 5.232 12 C -0.104 4.104 13 C 0.036 3.964 14 C -0.503 4.503 15 H 0.094 0.906 16 C -0.184 4.184 17 N -0.468 5.468 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.182 1.182 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.157 0.843 28 H 0.193 0.807 29 H 0.193 0.807 30 H 0.192 0.808 31 H 0.145 0.855 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.554 4.766 -9.493 10.636 hybrid contribution 0.168 0.265 1.914 1.940 sum -0.386 5.031 -7.578 9.105 Atomic orbital electron populations 1.21676 0.95171 1.01260 1.00899 1.19482 0.95466 0.89945 1.00369 1.23871 1.27944 1.02527 0.95300 1.81075 1.69024 1.03941 1.09468 1.22670 1.15096 0.97782 0.97269 1.19225 0.94428 0.90591 0.90555 1.22210 1.03446 1.00485 0.94129 1.21931 0.93617 0.91092 1.02303 1.22545 1.01707 1.01928 0.93469 1.23286 0.94542 0.93278 0.95926 1.67694 1.12358 1.01785 1.41367 1.20906 0.97237 0.97462 0.94777 1.17075 0.94108 0.90973 0.94283 1.19279 1.25148 1.14819 0.91041 0.90555 1.26723 0.92926 0.93218 1.05520 1.69974 1.16460 1.25155 1.35177 0.85221 0.79756 0.78653 0.76250 1.18821 1.19561 1.18238 0.93157 0.91125 0.94531 0.92934 0.92199 0.84348 0.80697 0.80656 0.80751 0.85450 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.89 71.98 0.71 -4.03 16 2 C -0.01 -0.54 5.97 29.85 0.18 -0.36 16 3 C -0.38 -18.50 5.66 25.58 0.14 -18.35 16 4 S 0.10 4.37 21.85 -56.49 -1.23 3.13 16 5 C -0.21 -10.39 6.33 23.84 0.15 -10.24 16 6 C 0.19 8.05 6.74 41.83 0.28 8.33 16 7 C -0.18 -5.99 9.62 22.62 0.22 -5.78 16 8 C -0.06 -1.53 10.16 22.44 0.23 -1.30 16 9 C -0.18 -4.03 10.11 22.42 0.23 -3.81 16 10 C 0.09 2.69 11.17 84.71 0.95 3.63 16 11 N -0.52 -22.06 9.92 -185.09 -1.84 -23.89 16 12 C -0.07 -3.84 8.53 21.73 0.19 -3.65 16 13 C 0.05 2.54 5.53 -22.23 -0.12 2.41 16 14 C -0.47 -26.05 8.61 23.37 0.20 -25.85 16 15 H 0.08 4.09 7.28 -2.91 -0.02 4.07 16 16 C 0.03 1.53 5.32 85.14 0.45 1.99 16 17 N -0.84 -46.66 10.87 21.78 0.24 -46.42 16 18 Si 0.98 40.44 29.58 68.60 2.03 42.47 16 19 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.05 2.29 7.36 -2.39 -0.02 2.27 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.14 4.19 7.24 -2.91 -0.02 4.17 16 28 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 30 H 0.18 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.13 7.68 6.21 -2.91 -0.02 7.67 16 32 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 Total: -1.00 -67.14 290.32 4.12 -63.01 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 1.13 Total: 18.73 kcal Atomic # 6 Polarization: -60.82 SS G_CDS: 3.80 Total: -57.02 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -1.60 Total: -70.32 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.23 Total: 3.13 kcal Total: -67.14 4.12 -63.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077097847.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.861 kcal (2) G-P(sol) polarization free energy of solvation -67.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds