Wall clock time and date at job start Mon Mar 30 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33700 * 122.46505 * 2 1 4 4 S 1.75867 * 109.75346 * 179.73453 * 3 2 1 5 5 C 1.75890 * 91.00722 * 0.31279 * 4 3 2 6 6 C 1.47708 * 125.27448 * 179.97438 * 5 4 3 7 7 C 1.40085 * 120.92980 * 129.69308 * 6 5 4 8 8 C 1.37829 * 118.98936 * 179.72940 * 7 6 5 9 9 N 1.32005 * 120.91038 * 359.97438 * 8 7 6 10 10 C 1.31980 * 122.06269 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.90600 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.50158 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47372 * 264.97685 * 12 11 10 14 14 H 1.07998 * 119.99510 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00112 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00185 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00055 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46679 * 59.99750 * 17 15 13 19 19 H 1.48499 * 109.47331 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47320 * 300.00045 * 17 15 13 21 21 C 1.34875 * 109.45694 * 359.68644 * 5 4 3 22 22 H 1.09004 * 109.47440 * 270.02994 * 1 2 3 23 23 H 1.09003 * 109.47155 * 30.02713 * 1 2 3 24 24 H 1.08994 * 109.47404 * 150.02340 * 1 2 3 25 25 H 1.08001 * 125.12257 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.50224 * 359.74836 * 7 6 5 27 27 H 1.08001 * 119.54379 * 179.97438 * 8 7 6 28 28 H 1.07994 * 119.54369 * 180.02562 * 10 9 8 29 29 H 1.08996 * 109.47812 * 24.97971 * 12 11 10 30 30 H 1.09003 * 109.47231 * 144.97644 * 12 11 10 31 31 H 0.97008 * 119.99947 * 180.02562 * 16 15 13 32 32 H 1.07995 * 122.64553 * 180.21938 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2246 1.1281 0.0000 4 16 3.9402 0.7411 0.0077 5 6 3.5834 -0.9812 0.0010 6 6 4.5912 -2.0611 0.0025 7 6 4.5170 -3.1138 0.9237 8 6 5.4756 -4.1035 0.8858 9 7 6.4519 -4.0681 -0.0020 10 6 6.5590 -3.0952 -0.8873 11 6 5.6438 -2.0645 -0.9210 12 6 5.7745 -0.9585 -1.9362 13 6 6.5137 0.2024 -1.3221 14 1 6.8551 0.1447 -0.2991 15 6 6.7541 1.3379 -2.0662 16 7 6.3388 1.4078 -3.3121 17 14 7.6697 2.7771 -1.3048 18 1 9.0217 2.3341 -0.8791 19 1 7.7986 3.8669 -2.3052 20 1 6.9173 3.2740 -0.1249 21 6 2.2470 -1.1632 0.0006 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8901 -0.5134 25 1 1.8128 2.1265 -0.0004 26 1 3.7206 -3.1496 1.6524 27 1 5.4273 -4.9191 1.5921 28 1 7.3741 -3.1070 -1.5956 29 1 6.3265 -1.3235 -2.8023 30 1 4.7823 -0.6330 -2.2487 31 1 6.5083 2.2066 -3.8358 32 1 1.7924 -2.1428 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259656215.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:56 Heat of formation + Delta-G solvation = 50.016230 kcal Electronic energy + Delta-G solvation = -16495.600091 eV Core-core repulsion = 13933.064062 eV Total energy + Delta-G solvation = -2562.536028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60261 -37.53683 -34.12039 -32.70514 -31.37244 -29.50460 -27.42129 -26.89339 -24.00478 -23.63885 -21.34195 -20.48478 -18.25501 -17.19183 -16.47048 -15.79487 -15.40408 -14.88511 -14.18450 -14.11803 -13.56540 -13.31229 -12.76160 -12.67390 -12.37334 -12.25917 -11.96555 -11.75901 -11.45222 -11.33461 -11.19922 -10.77100 -10.67538 -9.96218 -9.94118 -9.63457 -9.13139 -8.88004 -8.52227 -8.24127 -7.78351 -7.49826 -6.19820 -4.21124 1.20896 1.78385 1.99322 2.52961 2.85091 3.22586 3.23163 3.27602 3.30646 4.27468 4.47759 5.00092 5.04338 5.17867 5.40631 5.48900 5.57083 5.64393 5.76012 5.81512 5.82687 6.04542 6.12333 6.17617 6.40261 6.54325 6.58940 6.82914 6.95582 7.07208 7.26852 7.42753 7.56733 7.74326 8.11227 8.53738 8.78893 9.38176 10.88741 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.010651 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.792606 B = 2628.349060 C = 4174.784018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.119 4.119 3 C -0.274 4.274 4 S 0.249 5.751 5 C -0.149 4.149 6 C 0.012 3.988 7 C -0.157 4.157 8 C 0.067 3.933 9 N -0.490 5.490 10 C 0.091 3.909 11 C -0.075 4.075 12 C 0.047 3.953 13 C -0.503 4.503 14 H 0.058 0.942 15 C 0.074 3.926 16 N -0.877 5.877 17 Si 0.882 3.118 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.137 4.137 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.150 0.850 26 H 0.126 0.874 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.266 0.734 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 -3.303 6.651 10.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.410 4.410 4 S 0.525 5.475 5 C -0.268 4.268 6 C 0.002 3.998 7 C -0.179 4.179 8 C -0.090 4.090 9 N -0.199 5.199 10 C -0.066 4.066 11 C -0.078 4.078 12 C 0.009 3.991 13 C -0.544 4.544 14 H 0.076 0.924 15 C -0.131 4.131 16 N -0.514 5.514 17 Si 0.709 3.291 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.169 4.169 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.168 0.832 26 H 0.144 0.856 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.758 -2.898 6.518 9.167 hybrid contribution -1.449 0.710 0.237 1.631 sum -7.207 -2.188 6.755 10.117 Atomic orbital electron populations 1.20426 0.91069 1.01927 1.01303 1.18526 0.96478 0.92057 1.06110 1.26277 1.01428 1.01637 1.11697 1.85820 0.99437 0.96821 1.65415 1.22791 0.95541 0.97603 1.10852 1.18342 0.93746 0.92484 0.95179 1.22081 1.00789 0.95349 0.99712 1.22347 0.91370 0.97984 0.97271 1.67574 1.22492 1.25711 1.04102 1.22571 0.98003 0.89605 0.96397 1.21840 0.92201 0.97198 0.96566 1.18417 0.98776 0.89945 0.91958 1.20874 1.36377 0.98757 0.98411 0.92428 1.24904 0.95245 0.98253 0.94681 1.69931 1.44759 1.28828 1.07921 0.86784 0.80825 0.82112 0.79395 1.19855 1.20916 1.19607 1.19902 0.91598 0.98739 1.06681 0.92117 0.92234 0.92194 0.83237 0.85561 0.83636 0.82891 0.94753 0.94460 0.92450 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 10.13 36.00 0.36 -0.74 16 2 C -0.12 -1.94 5.79 -106.35 -0.62 -2.56 16 3 C -0.27 -4.74 10.98 29.14 0.32 -4.42 16 4 S 0.25 5.04 19.54 -107.50 -2.10 2.94 16 5 C -0.15 -2.91 5.08 -36.91 -0.19 -3.10 16 6 C 0.01 0.24 5.78 -104.66 -0.61 -0.37 16 7 C -0.16 -2.64 9.80 -39.04 -0.38 -3.02 16 8 C 0.07 1.10 11.17 -17.63 -0.20 0.90 16 9 N -0.49 -9.23 10.35 -13.38 -0.14 -9.37 16 10 C 0.09 1.81 10.83 -17.62 -0.19 1.62 16 11 C -0.07 -1.60 5.12 -104.08 -0.53 -2.14 16 12 C 0.05 1.13 4.40 -29.03 -0.13 1.01 16 13 C -0.50 -12.84 6.44 -34.44 -0.22 -13.06 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 16 N -0.88 -24.09 13.29 55.43 0.74 -23.35 16 17 Si 0.88 20.22 29.54 -169.99 -5.02 15.20 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 C -0.14 -2.37 9.78 -40.91 -0.40 -2.77 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 24 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 25 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 26 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 27 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 29 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 30 H 0.04 0.97 6.93 -51.93 -0.36 0.61 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 32 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -27.75 290.52 -8.72 -36.47 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -3.70 Total: 0.55 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -2.87 Total: -26.82 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.60 Total: -32.71 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -2.10 Total: 2.94 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.75 -8.72 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259656215.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.483 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds