Wall clock time and date at job start Mon Mar 30 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33700 * 122.46505 * 2 1 4 4 S 1.75867 * 109.75346 * 179.73453 * 3 2 1 5 5 C 1.75890 * 91.00722 * 0.31279 * 4 3 2 6 6 C 1.47708 * 125.27448 * 179.97438 * 5 4 3 7 7 C 1.40085 * 120.92980 * 129.69308 * 6 5 4 8 8 C 1.37829 * 118.98936 * 179.72940 * 7 6 5 9 9 N 1.32005 * 120.91038 * 359.97438 * 8 7 6 10 10 C 1.31980 * 122.06269 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.90600 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.50158 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47372 * 264.97685 * 12 11 10 14 14 H 1.07998 * 119.99510 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00112 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00185 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00055 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46679 * 59.99750 * 17 15 13 19 19 H 1.48499 * 109.47331 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47320 * 300.00045 * 17 15 13 21 21 C 1.34875 * 109.45694 * 359.68644 * 5 4 3 22 22 H 1.09004 * 109.47440 * 270.02994 * 1 2 3 23 23 H 1.09003 * 109.47155 * 30.02713 * 1 2 3 24 24 H 1.08994 * 109.47404 * 150.02340 * 1 2 3 25 25 H 1.08001 * 125.12257 * 359.97438 * 3 2 1 26 26 H 1.08003 * 120.50224 * 359.74836 * 7 6 5 27 27 H 1.08001 * 119.54379 * 179.97438 * 8 7 6 28 28 H 1.07994 * 119.54369 * 180.02562 * 10 9 8 29 29 H 1.08996 * 109.47812 * 24.97971 * 12 11 10 30 30 H 1.09003 * 109.47231 * 144.97644 * 12 11 10 31 31 H 0.97008 * 119.99947 * 180.02562 * 16 15 13 32 32 H 1.07995 * 122.64553 * 180.21938 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2246 1.1281 0.0000 4 16 3.9402 0.7411 0.0077 5 6 3.5834 -0.9812 0.0010 6 6 4.5912 -2.0611 0.0025 7 6 4.5170 -3.1138 0.9237 8 6 5.4756 -4.1035 0.8858 9 7 6.4519 -4.0681 -0.0020 10 6 6.5590 -3.0952 -0.8873 11 6 5.6438 -2.0645 -0.9210 12 6 5.7745 -0.9585 -1.9362 13 6 6.5137 0.2024 -1.3221 14 1 6.8551 0.1447 -0.2991 15 6 6.7541 1.3379 -2.0662 16 7 6.3388 1.4078 -3.3121 17 14 7.6697 2.7771 -1.3048 18 1 9.0217 2.3341 -0.8791 19 1 7.7986 3.8669 -2.3052 20 1 6.9173 3.2740 -0.1249 21 6 2.2470 -1.1632 0.0006 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8901 -0.5134 25 1 1.8128 2.1265 -0.0004 26 1 3.7206 -3.1496 1.6524 27 1 5.4273 -4.9191 1.5921 28 1 7.3741 -3.1070 -1.5956 29 1 6.3265 -1.3235 -2.8023 30 1 4.7823 -0.6330 -2.2487 31 1 6.5083 2.2066 -3.8358 32 1 1.7924 -2.1428 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259656215.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:55 Heat of formation + Delta-G solvation = 35.987213 kcal Electronic energy + Delta-G solvation = -16496.208434 eV Core-core repulsion = 13933.064062 eV Total energy + Delta-G solvation = -2563.144372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.06575 -38.88411 -35.88475 -34.30820 -33.01298 -30.78862 -29.14780 -28.18029 -25.58944 -25.27135 -22.86369 -21.97880 -19.60527 -18.63101 -18.46139 -17.26143 -16.86646 -16.65810 -15.71200 -15.46269 -14.95001 -14.60062 -14.38016 -14.06192 -13.88348 -13.78912 -13.52498 -13.13548 -13.07872 -12.77710 -12.57598 -12.49835 -12.40459 -11.71792 -11.69867 -11.26163 -10.64215 -10.52303 -10.31933 -9.75966 -9.25261 -8.97753 -8.19409 -6.26317 -0.23760 0.33226 0.55680 1.08250 1.36009 1.39624 1.46099 1.47044 1.89222 2.38327 2.99366 3.16423 3.61744 3.67556 4.07529 4.18339 4.26070 4.29062 4.45403 4.58916 4.70294 4.81742 4.92443 4.96085 5.05991 5.14161 5.19928 5.29164 5.35643 5.61784 5.68818 5.72393 5.81604 5.86785 6.14160 6.77750 7.09437 7.36919 8.89735 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.013963 B = 0.010651 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.792606 B = 2628.349060 C = 4174.784018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.116 4.116 3 C -0.265 4.265 4 S 0.160 5.840 5 C -0.163 4.163 6 C 0.002 3.998 7 C -0.147 4.147 8 C 0.078 3.922 9 N -0.500 5.500 10 C 0.082 3.918 11 C -0.106 4.106 12 C 0.063 3.937 13 C -0.500 4.500 14 H 0.048 0.952 15 C 0.033 3.967 16 N -0.914 5.914 17 Si 0.931 3.069 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.127 4.127 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.172 0.828 26 H 0.163 0.837 27 H 0.192 0.808 28 H 0.152 0.848 29 H 0.007 0.993 30 H 0.012 0.988 31 H 0.265 0.735 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.694 -4.364 8.728 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.402 4.402 4 S 0.434 5.566 5 C -0.281 4.281 6 C -0.007 4.007 7 C -0.169 4.169 8 C -0.079 4.079 9 N -0.210 5.210 10 C -0.073 4.073 11 C -0.109 4.109 12 C 0.026 3.974 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.167 4.167 16 N -0.553 5.553 17 Si 0.756 3.244 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.159 4.159 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.189 0.811 26 H 0.180 0.820 27 H 0.209 0.791 28 H 0.169 0.831 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.746 -3.965 8.591 12.228 hybrid contribution -1.008 0.922 -0.298 1.398 sum -8.754 -3.043 8.293 12.436 Atomic orbital electron populations 1.20518 0.87700 1.03204 1.03046 1.19024 0.98752 0.91128 1.03967 1.26364 0.98638 1.03260 1.11891 1.85930 1.03231 0.99444 1.67977 1.22864 0.96474 0.96324 1.12451 1.18571 0.93266 0.93497 0.95381 1.22445 1.01548 0.93882 0.99004 1.23137 0.89730 0.98558 0.96427 1.67653 1.23651 1.25134 1.04514 1.22524 0.97908 0.89811 0.97101 1.21592 0.94477 0.97286 0.97547 1.18056 0.96575 0.90815 0.91979 1.20913 1.35888 0.99402 0.97852 0.93342 1.25508 0.95974 1.00350 0.94914 1.70034 1.46644 1.29481 1.09170 0.86000 0.79821 0.79644 0.78934 1.19534 1.20551 1.18810 1.20311 0.90761 1.00362 1.04498 0.89998 0.91214 0.90779 0.81097 0.81987 0.79082 0.83065 0.97426 0.97021 0.92574 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 10.13 71.23 0.72 -1.05 16 2 C -0.12 -3.47 5.79 -20.99 -0.12 -3.59 16 3 C -0.27 -8.82 10.98 66.79 0.73 -8.08 16 4 S 0.16 6.59 19.54 -56.49 -1.10 5.49 16 5 C -0.16 -6.25 5.08 24.00 0.12 -6.13 16 6 C 0.00 0.10 5.78 -19.89 -0.12 -0.02 16 7 C -0.15 -4.47 9.80 22.62 0.22 -4.25 16 8 C 0.08 2.30 11.17 84.57 0.94 3.24 16 9 N -0.50 -18.07 10.35 -196.24 -2.03 -20.10 16 10 C 0.08 3.32 10.83 84.58 0.92 4.24 16 11 C -0.11 -4.65 5.12 -19.52 -0.10 -4.75 16 12 C 0.06 3.26 4.40 29.10 0.13 3.39 16 13 C -0.50 -26.70 6.44 25.60 0.16 -26.54 16 14 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 15 C 0.03 1.80 5.46 84.65 0.46 2.26 16 16 N -0.91 -52.36 13.29 21.44 0.28 -52.07 16 17 Si 0.93 42.46 29.54 68.60 2.03 44.48 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 C -0.13 -4.07 9.78 21.41 0.21 -3.86 16 22 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 23 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 24 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 25 H 0.17 4.82 8.06 -2.91 -0.02 4.79 16 26 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 27 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.15 5.93 8.06 -2.91 -0.02 5.91 16 29 H 0.01 0.41 8.06 -2.39 -0.02 0.39 16 30 H 0.01 0.64 6.93 -2.39 -0.02 0.63 16 31 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 32 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -62.39 290.52 4.58 -57.81 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.12 Total: 9.54 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 4.29 Total: -45.15 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.75 Total: -72.17 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -1.10 Total: 5.49 kcal Total: -62.39 4.58 -57.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259656215.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.795 kcal (2) G-P(sol) polarization free energy of solvation -62.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds