Wall clock time and date at job start Mon Mar 30 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33000 * 122.53816 * 2 1 4 4 S 1.75808 * 109.96105 * 180.02562 * 3 2 1 5 5 C 1.75859 * 91.15781 * 359.97438 * 4 3 2 6 6 C 1.34666 * 109.53333 * 0.02562 * 5 4 3 7 7 C 1.48239 * 122.79012 * 179.97438 * 6 5 4 8 8 C 1.39867 * 120.90590 * 129.69105 * 7 6 5 9 9 C 1.37872 * 119.01133 * 179.75828 * 8 7 6 10 10 N 1.31985 * 120.88892 * 0.53560 * 9 8 7 11 11 C 1.31957 * 122.01612 * 359.73934 * 10 9 8 12 12 C 1.50700 * 119.56199 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46920 * 304.97793 * 12 11 10 14 14 H 1.08000 * 120.00206 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99644 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99905 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47281 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47158 * 120.00177 * 17 15 13 20 20 H 1.48503 * 109.47302 * 240.00263 * 17 15 13 21 21 C 1.37915 * 120.88256 * 359.97438 * 11 10 9 22 22 H 1.09003 * 109.46998 * 269.98149 * 1 2 3 23 23 H 1.08992 * 109.46956 * 29.98416 * 1 2 3 24 24 H 1.09002 * 109.46963 * 149.98138 * 1 2 3 25 25 H 1.08006 * 125.02105 * 0.03750 * 3 2 1 26 26 H 1.08001 * 125.23121 * 180.02562 * 5 4 3 27 27 H 1.07997 * 120.49562 * 0.02562 * 8 7 6 28 28 H 1.08008 * 119.55437 * 180.27751 * 9 8 7 29 29 H 1.09000 * 109.46766 * 64.97419 * 12 11 10 30 30 H 1.08998 * 109.47125 * 184.98180 * 12 11 10 31 31 H 0.97004 * 119.99837 * 180.02562 * 16 15 13 32 32 H 1.07995 * 120.49336 * 180.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2224 1.1212 0.0000 4 16 3.9383 0.7384 -0.0007 5 6 3.5902 -0.9854 -0.0002 6 6 2.2570 -1.1754 -0.0001 7 6 1.6381 -2.5225 -0.0003 8 6 0.6418 -2.8554 0.9232 9 6 0.0894 -4.1181 0.8848 10 7 0.4962 -5.0090 0.0000 11 6 1.4369 -4.7373 -0.8846 12 6 1.8595 -5.7967 -1.8696 13 6 2.2732 -7.0394 -1.1241 14 1 2.2336 -7.0601 -0.0451 15 6 2.7012 -8.1502 -1.8197 16 7 2.7490 -8.1251 -3.1337 17 14 3.2133 -9.6908 -0.8957 18 1 3.0693 -9.4629 0.5647 19 1 2.3487 -10.8255 -1.3078 20 1 4.6297 -10.0083 -1.2093 21 6 2.0386 -3.4968 -0.9198 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 1.8101 2.1195 0.0006 26 1 4.3315 -1.7707 0.0000 27 1 0.3072 -2.1329 1.6527 28 1 -0.6837 -4.3831 1.5909 29 1 1.0257 -6.0307 -2.5315 30 1 2.6998 -5.4301 -2.4592 31 1 3.0497 -8.9068 -3.6232 32 1 2.8076 -3.2811 -1.6468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259748265.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:20 Heat of formation + Delta-G solvation = 53.149076 kcal Electronic energy + Delta-G solvation = -15958.622119 eV Core-core repulsion = 13396.221941 eV Total energy + Delta-G solvation = -2562.400178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90740 -38.07007 -33.47712 -32.38197 -31.39856 -30.42404 -27.50378 -27.31021 -24.17613 -23.42542 -22.02254 -20.82248 -18.16619 -17.61457 -16.38064 -15.86900 -15.51198 -15.10572 -14.58266 -14.22125 -13.83190 -13.47039 -13.10598 -12.95978 -12.55276 -12.26838 -12.17550 -11.94479 -11.80186 -11.35654 -11.21772 -10.89844 -10.71154 -10.60468 -9.80239 -9.48102 -9.38122 -8.67654 -8.62558 -8.42080 -8.20172 -8.12919 -6.00723 -4.01114 0.84631 1.57836 1.64183 1.79888 1.93538 2.72843 3.33657 3.40847 3.47020 4.41203 4.54271 4.75940 4.84339 5.08353 5.12569 5.33295 5.36545 5.39119 5.46284 5.56463 5.58164 5.74474 5.83730 5.98475 6.18100 6.27341 6.37465 6.44225 6.60608 6.79498 7.31392 7.51792 7.55793 7.96432 8.32349 8.86243 9.02597 9.61206 11.10650 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.004603 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.557224 B = 6081.245443 C = 6571.513871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.084 4.084 3 C -0.223 4.223 4 S 0.093 5.907 5 C -0.193 4.193 6 C -0.057 4.057 7 C 0.007 3.993 8 C -0.190 4.190 9 C 0.097 3.903 10 N -0.471 5.471 11 C 0.177 3.823 12 C 0.058 3.942 13 C -0.498 4.498 14 H 0.060 0.940 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.285 1.285 21 C -0.169 4.169 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.163 0.837 26 H 0.169 0.831 27 H 0.123 0.877 28 H 0.146 0.854 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.261 0.739 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 18.664 6.691 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.096 4.096 3 C -0.358 4.358 4 S 0.359 5.641 5 C -0.329 4.329 6 C -0.069 4.069 7 C -0.003 4.003 8 C -0.211 4.211 9 C -0.060 4.060 10 N -0.180 5.180 11 C 0.041 3.959 12 C 0.020 3.980 13 C -0.536 4.536 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.211 1.211 21 C -0.190 4.190 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.181 0.819 26 H 0.186 0.814 27 H 0.141 0.859 28 H 0.164 0.836 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.509 18.634 6.535 19.753 hybrid contribution -0.483 -0.796 0.477 1.046 sum -0.992 17.838 7.012 19.192 Atomic orbital electron populations 1.20595 0.89590 1.02991 1.02369 1.18882 0.97553 0.91084 1.02071 1.25212 0.95871 1.02099 1.12653 1.84129 1.06254 1.00307 1.73439 1.25840 0.99019 0.99001 1.09009 1.17726 0.92017 0.92916 1.04259 1.18647 0.95163 0.91149 0.95377 1.21927 0.99502 0.98730 1.00914 1.22689 0.97837 0.89289 0.96227 1.67691 1.13027 1.33879 1.03438 1.22205 0.88071 0.92983 0.92678 1.18356 0.96975 0.90805 0.91823 1.21031 1.42747 0.96569 0.93300 0.92157 1.24988 0.95873 0.98797 0.94881 1.69959 1.47941 1.30010 1.05880 0.86452 0.77998 0.82985 0.80107 1.19723 1.20939 1.21099 1.22151 1.02436 0.93996 1.00405 0.91082 0.91684 0.90877 0.81921 0.81375 0.85882 0.83630 0.93953 0.94623 0.92965 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 8.82 36.01 0.32 -0.67 16 2 C -0.08 -1.01 5.80 -105.99 -0.61 -1.63 16 3 C -0.22 -2.36 10.93 28.92 0.32 -2.04 16 4 S 0.09 0.99 23.32 -107.50 -2.51 -1.51 16 5 C -0.19 -2.52 10.88 29.47 0.32 -2.20 16 6 C -0.06 -0.80 5.40 -106.61 -0.58 -1.38 16 7 C 0.01 0.11 5.02 -104.58 -0.52 -0.41 16 8 C -0.19 -2.91 8.45 -39.11 -0.33 -3.24 16 9 C 0.10 1.68 11.17 -17.62 -0.20 1.48 16 10 N -0.47 -10.31 9.95 -9.58 -0.10 -10.41 16 11 C 0.18 3.98 6.12 -82.66 -0.51 3.48 16 12 C 0.06 1.51 5.37 -29.03 -0.16 1.35 16 13 C -0.50 -14.26 8.91 -34.44 -0.31 -14.57 16 14 H 0.06 1.75 7.68 -52.49 -0.40 1.35 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C -0.17 -3.23 9.32 -39.10 -0.36 -3.60 16 22 H 0.07 0.63 7.95 -51.93 -0.41 0.22 16 23 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 24 H 0.07 0.85 6.99 -51.93 -0.36 0.49 16 25 H 0.16 1.30 8.06 -52.48 -0.42 0.87 16 26 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.12 1.53 7.45 -52.49 -0.39 1.14 16 28 H 0.15 2.03 8.06 -52.48 -0.42 1.60 16 29 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.13 2.31 7.94 -52.49 -0.42 1.90 16 LS Contribution 293.69 15.07 4.43 4.43 Total: -1.00 -31.15 293.69 -8.82 -39.97 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -3.64 Total: -1.54 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -2.72 Total: -21.93 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.64 Total: -36.40 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.15 -8.82 -39.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748265.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.117 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds