Wall clock time and date at job start Mon Mar 30 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33000 * 122.53816 * 2 1 4 4 S 1.75808 * 109.96105 * 180.02562 * 3 2 1 5 5 C 1.75859 * 91.15781 * 359.97438 * 4 3 2 6 6 C 1.34666 * 109.53333 * 0.02562 * 5 4 3 7 7 C 1.48239 * 122.79012 * 179.97438 * 6 5 4 8 8 C 1.39867 * 120.90590 * 129.69105 * 7 6 5 9 9 C 1.37872 * 119.01133 * 179.75828 * 8 7 6 10 10 N 1.31985 * 120.88892 * 0.53560 * 9 8 7 11 11 C 1.31957 * 122.01612 * 359.73934 * 10 9 8 12 12 C 1.50700 * 119.56199 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46920 * 304.97793 * 12 11 10 14 14 H 1.08000 * 120.00206 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99644 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99905 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47281 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47158 * 120.00177 * 17 15 13 20 20 H 1.48503 * 109.47302 * 240.00263 * 17 15 13 21 21 C 1.37915 * 120.88256 * 359.97438 * 11 10 9 22 22 H 1.09003 * 109.46998 * 269.98149 * 1 2 3 23 23 H 1.08992 * 109.46956 * 29.98416 * 1 2 3 24 24 H 1.09002 * 109.46963 * 149.98138 * 1 2 3 25 25 H 1.08006 * 125.02105 * 0.03750 * 3 2 1 26 26 H 1.08001 * 125.23121 * 180.02562 * 5 4 3 27 27 H 1.07997 * 120.49562 * 0.02562 * 8 7 6 28 28 H 1.08008 * 119.55437 * 180.27751 * 9 8 7 29 29 H 1.09000 * 109.46766 * 64.97419 * 12 11 10 30 30 H 1.08998 * 109.47125 * 184.98180 * 12 11 10 31 31 H 0.97004 * 119.99837 * 180.02562 * 16 15 13 32 32 H 1.07995 * 120.49336 * 180.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2224 1.1212 0.0000 4 16 3.9383 0.7384 -0.0007 5 6 3.5902 -0.9854 -0.0002 6 6 2.2570 -1.1754 -0.0001 7 6 1.6381 -2.5225 -0.0003 8 6 0.6418 -2.8554 0.9232 9 6 0.0894 -4.1181 0.8848 10 7 0.4962 -5.0090 0.0000 11 6 1.4369 -4.7373 -0.8846 12 6 1.8595 -5.7967 -1.8696 13 6 2.2732 -7.0394 -1.1241 14 1 2.2336 -7.0601 -0.0451 15 6 2.7012 -8.1502 -1.8197 16 7 2.7490 -8.1251 -3.1337 17 14 3.2133 -9.6908 -0.8957 18 1 3.0693 -9.4629 0.5647 19 1 2.3487 -10.8255 -1.3078 20 1 4.6297 -10.0083 -1.2093 21 6 2.0386 -3.4968 -0.9198 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 1.8101 2.1195 0.0006 26 1 4.3315 -1.7707 0.0000 27 1 0.3072 -2.1329 1.6527 28 1 -0.6837 -4.3831 1.5909 29 1 1.0257 -6.0307 -2.5315 30 1 2.6998 -5.4301 -2.4592 31 1 3.0497 -8.9068 -3.6232 32 1 2.8076 -3.2811 -1.6468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259748265.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:19 Heat of formation + Delta-G solvation = 35.691476 kcal Electronic energy + Delta-G solvation = -15959.379137 eV Core-core repulsion = 13396.221941 eV Total energy + Delta-G solvation = -2563.157196 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.25755 -39.16019 -35.49232 -33.65881 -33.14830 -31.47850 -29.38004 -28.22013 -25.73161 -25.01679 -23.34704 -22.19727 -19.27449 -18.58479 -18.47204 -17.17267 -16.98861 -16.62507 -16.21136 -15.44011 -15.02351 -14.76381 -14.40113 -14.07454 -13.91435 -13.86650 -13.47770 -13.20754 -13.07467 -12.77986 -12.67230 -12.62800 -12.40174 -11.77558 -11.76353 -11.51701 -10.77824 -10.63037 -10.12674 -9.74981 -9.59048 -9.14769 -8.21038 -6.30139 -0.16891 0.34116 0.43320 0.69269 1.03026 1.38691 1.39737 1.53364 1.70045 2.40869 2.99521 3.12986 3.64743 3.65806 3.92229 4.06297 4.20986 4.28968 4.35030 4.52230 4.63061 4.77509 4.84899 4.92169 4.96977 5.03313 5.12793 5.27586 5.30653 5.45253 5.54219 5.57609 5.72865 5.90231 6.17250 6.78677 7.32647 7.38627 8.90680 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.004603 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.557224 B = 6081.245443 C = 6571.513871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.101 4.101 3 C -0.214 4.214 4 S 0.133 5.867 5 C -0.213 4.213 6 C -0.077 4.077 7 C 0.017 3.983 8 C -0.168 4.168 9 C 0.092 3.908 10 N -0.511 5.511 11 C 0.145 3.855 12 C 0.066 3.934 13 C -0.515 4.515 14 H 0.050 0.950 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.274 1.274 21 C -0.178 4.178 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.194 0.806 26 H 0.164 0.836 27 H 0.163 0.837 28 H 0.181 0.819 29 H 0.009 0.991 30 H 0.019 0.981 31 H 0.266 0.734 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 20.838 8.710 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.349 4.349 4 S 0.400 5.600 5 C -0.349 4.349 6 C -0.090 4.090 7 C 0.007 3.993 8 C -0.188 4.188 9 C -0.065 4.065 10 N -0.222 5.222 11 C 0.010 3.990 12 C 0.028 3.972 13 C -0.554 4.554 14 H 0.069 0.931 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.199 1.199 21 C -0.198 4.198 22 H 0.106 0.894 23 H 0.102 0.898 24 H 0.072 0.928 25 H 0.211 0.789 26 H 0.181 0.819 27 H 0.181 0.819 28 H 0.198 0.802 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.693 20.822 8.549 22.519 hybrid contribution -0.418 -1.287 -0.109 1.357 sum -1.111 19.535 8.440 21.309 Atomic orbital electron populations 1.20626 0.88331 1.03020 1.03432 1.19000 0.98551 0.90560 1.03103 1.25616 0.95595 1.03067 1.10619 1.84031 1.06342 0.97593 1.72074 1.26005 0.98900 1.01011 1.08944 1.17759 0.92630 0.92359 1.06220 1.18870 0.94722 0.91676 0.94069 1.22319 0.97710 0.98475 1.00297 1.23273 0.98272 0.89429 0.95517 1.67518 1.13687 1.36263 1.04690 1.21595 0.90498 0.93331 0.93612 1.18043 0.95110 0.91775 0.92234 1.21270 1.43108 0.97981 0.92996 0.93129 1.25883 0.95679 1.02114 0.95775 1.70073 1.48572 1.31163 1.07381 0.85373 0.78064 0.78742 0.78704 1.19386 1.20093 1.19905 1.22063 1.02599 0.93663 1.01495 0.89436 0.89771 0.92805 0.78878 0.81874 0.81922 0.80162 0.97278 0.96266 0.92560 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 8.82 71.24 0.63 -1.00 16 2 C -0.10 -2.14 5.80 -20.74 -0.12 -2.26 16 3 C -0.21 -3.70 10.93 66.65 0.73 -2.97 16 4 S 0.13 2.48 23.32 -56.49 -1.32 1.17 16 5 C -0.21 -5.29 10.88 67.00 0.73 -4.56 16 6 C -0.08 -2.04 5.40 -21.15 -0.11 -2.16 16 7 C 0.02 0.55 5.02 -19.84 -0.10 0.45 16 8 C -0.17 -4.78 8.45 22.58 0.19 -4.59 16 9 C 0.09 3.07 11.17 84.58 0.94 4.02 16 10 N -0.51 -22.95 9.95 -184.22 -1.83 -24.79 16 11 C 0.15 6.88 6.12 42.46 0.26 7.14 16 12 C 0.07 3.69 5.37 29.10 0.16 3.85 16 13 C -0.52 -30.87 8.91 25.60 0.23 -30.64 16 14 H 0.05 3.05 7.68 -2.91 -0.02 3.03 16 15 C 0.00 0.18 5.46 84.66 0.46 0.65 16 16 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 17 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 C -0.18 -7.04 9.32 22.58 0.21 -6.83 16 22 H 0.09 1.19 7.95 -2.39 -0.02 1.17 16 23 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 24 H 0.05 1.13 6.99 -2.39 -0.02 1.12 16 25 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 26 H 0.16 4.09 8.06 -2.91 -0.02 4.06 16 27 H 0.16 3.34 7.45 -2.91 -0.02 3.32 16 28 H 0.18 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.02 1.10 7.86 -2.39 -0.02 1.08 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.13 4.88 7.94 -2.91 -0.02 4.86 16 Total: -1.00 -70.27 293.69 4.48 -65.78 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.12 Total: 5.75 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 4.20 Total: -38.91 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.55 Total: -81.79 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.32 Total: 1.17 kcal Total: -70.27 4.48 -65.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748265.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.476 kcal (2) G-P(sol) polarization free energy of solvation -70.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds