Wall clock time and date at job start Mon Mar 30 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37008 * 125.43756 * 2 1 4 4 C 1.35131 * 108.76002 * 180.80218 * 3 2 1 5 5 C 1.39887 * 106.85695 * 0.11843 * 4 3 2 6 6 C 1.35126 * 125.43154 * 179.97438 * 2 1 3 7 7 C 1.50416 * 130.09297 * 358.32794 * 6 2 1 8 8 C 1.52637 * 111.25907 * 147.97630 * 7 6 2 9 9 C 1.51969 * 111.53334 * 44.52759 * 8 7 6 10 10 C 1.33937 * 124.78615 * 148.22617 * 9 8 7 11 11 S 1.75445 * 111.52793 * 177.44419 * 10 9 8 12 12 C 1.75757 * 91.39756 * 0.12114 * 11 10 9 13 13 C 1.39403 * 125.30714 * 181.15088 * 12 11 10 14 14 H 1.07999 * 119.99856 * 179.97438 * 13 12 11 15 15 C 1.40090 * 119.99716 * 359.97438 * 13 12 11 16 16 N 1.30895 * 120.00412 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99704 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46961 * 60.00294 * 17 15 13 19 19 H 1.48501 * 109.47178 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47442 * 300.00193 * 17 15 13 21 21 C 1.38768 * 109.38687 * 1.13235 * 12 11 10 22 22 H 1.08999 * 109.47795 * 270.00617 * 1 2 3 23 23 H 1.09001 * 109.46922 * 30.00124 * 1 2 3 24 24 H 1.08998 * 109.47709 * 150.00116 * 1 2 3 25 25 H 1.07999 * 125.61732 * 0.83881 * 3 2 1 26 26 H 1.07993 * 126.57177 * 180.11865 * 4 3 2 27 27 H 1.09002 * 109.11284 * 268.41847 * 7 6 2 28 28 H 1.09000 * 109.11202 * 27.53723 * 7 6 2 29 29 H 1.08997 * 109.08470 * 164.99690 * 8 7 6 30 30 H 1.08995 * 109.08545 * 283.97926 * 8 7 6 31 31 H 1.07998 * 124.23833 * 357.44694 * 10 9 8 32 32 H 0.96994 * 120.00172 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1163 0.0000 4 6 3.5537 0.7285 -0.0179 5 6 3.5580 -0.6703 -0.0321 6 6 2.2483 -1.1010 0.0005 7 6 1.8727 -2.5571 0.0347 8 6 2.8841 -3.4077 -0.7292 9 6 4.3123 -3.0070 -0.3989 10 6 5.3566 -3.8456 -0.3813 11 16 6.8536 -3.0023 -0.0267 12 6 6.0085 -1.4665 0.1009 13 6 6.6084 -0.2362 0.3651 14 1 6.0047 0.6572 0.4247 15 6 7.9945 -0.1589 0.5532 16 7 8.7263 -1.2418 0.4805 17 14 8.7985 1.4898 0.9064 18 1 8.2345 2.0576 2.1573 19 1 10.2633 1.3026 1.0637 20 1 8.5371 2.4198 -0.2214 21 6 4.6509 -1.6695 -0.1027 22 1 -0.3635 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8899 -0.5138 25 1 1.9088 2.1377 0.0129 26 1 4.4190 1.3747 -0.0207 27 1 1.8356 -2.8919 1.0714 28 1 0.8883 -2.6824 -0.4161 29 1 2.7394 -4.4555 -0.4662 30 1 2.7178 -3.2839 -1.7993 31 1 5.2859 -4.9079 -0.5628 32 1 9.6860 -1.1882 0.6104 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260167855.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:45 Heat of formation + Delta-G solvation = 36.928874 kcal Electronic energy + Delta-G solvation = -16751.156061 eV Core-core repulsion = 14188.052523 eV Total energy + Delta-G solvation = -2563.103538 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.94532 -38.24685 -36.06537 -34.01874 -33.18725 -30.97241 -28.84465 -27.45067 -25.84344 -24.98807 -22.59520 -20.62860 -20.36229 -19.59811 -17.93937 -17.42112 -16.87508 -16.35813 -16.02683 -15.09826 -14.92300 -14.74897 -14.12015 -14.02824 -13.69407 -13.50067 -13.27777 -13.02783 -12.91694 -12.75658 -12.73761 -12.34251 -12.09686 -12.03106 -11.76891 -11.18380 -11.15186 -10.74893 -9.72887 -9.11114 -8.80152 -8.74817 -7.94925 -6.22596 0.85067 1.35744 1.43521 1.50142 1.54367 1.79168 1.93612 2.09448 2.27753 2.33572 2.72717 3.42904 4.00984 4.15915 4.23755 4.37316 4.47668 4.56346 4.69600 4.80199 4.82320 4.89083 4.95751 4.96586 5.15043 5.22524 5.26965 5.51234 5.68549 5.85130 6.11015 6.23720 6.30738 6.42285 6.66015 6.77164 6.80857 6.93843 8.11871 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.021227 B = 0.008426 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.746735 B = 3322.401815 C = 4591.627555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.436 5.436 3 C -0.025 4.025 4 C -0.226 4.226 5 C -0.077 4.077 6 C -0.051 4.051 7 C -0.018 4.018 8 C -0.046 4.046 9 C -0.052 4.052 10 C -0.406 4.406 11 S 0.090 5.910 12 C 0.017 3.983 13 C -0.412 4.412 14 H 0.098 0.902 15 C 0.012 3.988 16 N -0.810 5.810 17 Si 1.003 2.997 18 H -0.258 1.258 19 H -0.260 1.260 20 H -0.256 1.256 21 C -0.287 4.287 22 H 0.080 0.920 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.193 0.807 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 3.168 -0.234 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.111 5.111 3 C -0.155 4.155 4 C -0.251 4.251 5 C -0.085 4.085 6 C -0.164 4.164 7 C -0.056 4.056 8 C -0.085 4.085 9 C -0.063 4.063 10 C -0.540 4.540 11 S 0.351 5.649 12 C -0.103 4.103 13 C -0.446 4.446 14 H 0.116 0.884 15 C -0.205 4.205 16 N -0.437 5.437 17 Si 0.822 3.178 18 H -0.182 1.182 19 H -0.184 1.184 20 H -0.181 1.181 21 C -0.295 4.295 22 H 0.098 0.902 23 H 0.121 0.879 24 H 0.110 0.890 25 H 0.209 0.791 26 H 0.137 0.863 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.768 2.516 -0.094 10.087 hybrid contribution -0.481 0.804 -0.017 0.937 sum -10.250 3.320 -0.111 10.775 Atomic orbital electron populations 1.22246 0.75281 1.05584 1.04076 1.43555 1.07068 1.04513 1.55924 1.22125 0.89265 0.91928 1.12201 1.20554 0.96678 0.94475 1.13377 1.18131 0.91575 0.92514 1.06238 1.20665 0.89795 0.90286 1.15646 1.19547 0.98725 0.86820 1.00489 1.20237 0.89568 0.99200 0.99541 1.19669 0.95447 0.92472 0.98722 1.25246 0.99770 1.02270 1.26718 1.84221 1.07289 0.99186 1.74247 1.21765 0.94499 0.96671 0.97363 1.19457 0.93034 0.94421 1.37709 0.88416 1.27185 0.97522 1.03349 0.92472 1.68911 1.09218 1.31306 1.34297 0.84896 0.77324 0.75552 0.80061 1.18179 1.18361 1.18054 1.17941 0.91057 0.93503 1.26982 0.90155 0.87885 0.89047 0.79053 0.86301 0.91798 0.88771 0.89642 0.91693 0.84781 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.98 127.77 1.40 2.69 16 2 N -0.44 -14.05 3.13 -531.05 -1.66 -15.71 16 3 C -0.02 -0.86 11.42 83.17 0.95 0.09 16 4 C -0.23 -10.07 10.13 21.95 0.22 -9.85 16 5 C -0.08 -3.78 6.11 -20.29 -0.12 -3.91 16 6 C -0.05 -2.06 6.77 41.88 0.28 -1.78 16 7 C -0.02 -0.60 6.00 29.64 0.18 -0.42 16 8 C -0.05 -1.73 6.07 30.13 0.18 -1.55 16 9 C -0.05 -2.57 5.75 -19.73 -0.11 -2.69 16 10 C -0.41 -20.53 10.96 66.84 0.73 -19.79 16 11 S 0.09 4.88 20.20 -56.49 -1.14 3.74 16 12 C 0.02 0.97 6.18 22.68 0.14 1.11 16 13 C -0.41 -22.86 9.04 23.00 0.21 -22.65 16 14 H 0.10 5.27 5.21 -2.91 -0.02 5.26 16 15 C 0.01 0.59 5.50 85.28 0.47 1.06 16 16 N -0.81 -41.68 10.63 21.86 0.23 -41.45 16 17 Si 1.00 37.91 29.56 68.60 2.03 39.93 16 18 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 19 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 21 C -0.29 -15.83 6.00 -19.78 -0.12 -15.95 16 22 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.09 1.47 7.36 -2.39 -0.02 1.45 16 25 H 0.19 4.75 8.06 -2.91 -0.02 4.73 16 26 H 0.12 5.42 6.24 -2.91 -0.02 5.40 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.09 2.35 7.38 -2.39 -0.02 2.34 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.13 6.06 8.06 -2.91 -0.02 6.03 16 32 H 0.30 13.98 8.30 -92.71 -0.77 13.21 16 Total: -1.00 -69.70 277.03 5.01 -64.69 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.14 Total: 22.41 kcal Atomic # 6 Polarization: -78.03 SS G_CDS: 4.41 Total: -73.62 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -1.43 Total: -57.16 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.14 Total: 3.74 kcal Total: -69.70 5.01 -64.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260167855.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.623 kcal (2) G-P(sol) polarization free energy of solvation -69.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds