Wall clock time and date at job start Mon Mar 30 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35686 * 117.00131 * 2 1 4 4 C 1.38363 * 120.61249 * 355.19690 * 3 2 1 5 5 N 1.31922 * 121.07491 * 180.26375 * 4 3 2 6 6 C 1.31957 * 122.49229 * 359.73951 * 5 4 3 7 7 C 1.50698 * 119.46110 * 180.02562 * 6 5 4 8 8 F 1.39901 * 109.47428 * 29.98134 * 7 6 5 9 9 F 1.39909 * 109.47011 * 149.97717 * 7 6 5 10 10 C 1.38320 * 121.07255 * 359.97438 * 6 5 4 11 11 O 1.35699 * 120.60858 * 179.97438 * 10 6 5 12 12 C 1.42900 * 117.00041 * 270.02019 * 11 10 6 13 13 C 1.41615 * 120.61185 * 174.94572 * 3 2 1 14 14 C 1.41003 * 121.09861 * 0.02562 * 13 3 2 15 15 H 1.07997 * 119.99431 * 143.39255 * 14 13 3 16 16 C 1.40051 * 120.00021 * 323.11532 * 14 13 3 17 17 N 1.30796 * 119.99931 * 156.82167 * 16 14 13 18 18 Si 1.86804 * 120.00020 * 336.82823 * 16 14 13 19 19 H 1.48498 * 109.47139 * 355.60716 * 18 16 14 20 20 H 1.48505 * 109.46781 * 115.60995 * 18 16 14 21 21 H 1.48501 * 109.46881 * 235.60844 * 18 16 14 22 22 H 1.08998 * 109.47502 * 300.00250 * 1 2 3 23 23 H 1.09008 * 109.47003 * 60.00261 * 1 2 3 24 24 H 1.08999 * 109.47226 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.46533 * 359.97438 * 4 3 2 26 26 H 1.09000 * 109.47511 * 269.97575 * 7 6 5 27 27 H 1.08995 * 109.47190 * 179.97438 * 12 11 10 28 28 H 1.09002 * 109.47220 * 300.00202 * 12 11 10 29 29 H 1.09002 * 109.47308 * 59.99882 * 12 11 10 30 30 H 0.96995 * 120.00108 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.3076 2.3755 -0.0997 5 7 1.8974 3.5555 -0.1058 6 6 3.2065 3.6941 -0.0134 7 6 3.8082 5.0756 -0.0266 8 9 2.9013 5.9848 0.5285 9 9 4.9887 5.0773 0.7243 10 6 4.0351 2.5920 0.0963 11 8 5.3801 2.7455 0.1902 12 6 6.1179 2.7642 -1.0335 13 6 3.4541 1.3003 0.1074 14 6 4.2527 0.1433 0.2162 15 1 5.2183 0.1065 -0.2662 16 6 3.7963 -0.9557 0.9547 17 7 4.2686 -2.1503 0.7089 18 14 2.5130 -0.7153 2.2907 19 1 2.2224 0.7330 2.4431 20 1 1.2682 -1.4333 1.9161 21 1 3.0283 -1.2545 3.5748 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 0.2319 2.3189 -0.1785 26 1 4.0305 5.3654 -1.0536 27 1 7.1782 2.8930 -0.8165 28 1 5.9667 1.8238 -1.5634 29 1 5.7714 3.5907 -1.6540 30 1 3.9523 -2.9115 1.2201 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309208371.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:33 Heat of formation + Delta-G solvation = -158.911766 kcal Electronic energy + Delta-G solvation = -20261.828067 eV Core-core repulsion = 16693.249841 eV Total energy + Delta-G solvation = -3568.578227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.80819 -47.82899 -41.45771 -39.54615 -37.97347 -35.86587 -33.14770 -31.75308 -28.61526 -28.32823 -27.38333 -26.51679 -23.07076 -22.90869 -20.06661 -19.06003 -18.72226 -18.42014 -18.04058 -17.26875 -17.15715 -17.00310 -16.40012 -16.14508 -15.50968 -15.17646 -14.81903 -14.68595 -14.34010 -14.16759 -14.08332 -13.63518 -13.50740 -12.98997 -12.89582 -12.62302 -12.45271 -12.41613 -12.06766 -11.70580 -11.18753 -10.99953 -10.13096 -9.91680 -9.31637 -8.98819 -6.60818 0.18483 0.44570 1.26062 1.29787 1.43886 2.12069 2.44051 2.51863 2.76354 3.00974 3.22774 3.29917 3.64484 4.02701 4.04436 4.22821 4.38531 4.39826 4.46885 4.55432 4.62168 4.69080 4.78823 4.85073 5.10534 5.30470 5.45901 6.01032 6.18142 6.53969 6.65021 6.84647 7.17765 8.04190 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.009733 C = 0.007820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.446008 B = 2876.166442 C = 3579.724967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.319 6.319 3 C -0.011 4.011 4 C 0.029 3.971 5 N -0.509 5.509 6 C 0.012 3.988 7 C 0.335 3.665 8 F -0.203 7.203 9 F -0.195 7.195 10 C -0.012 4.012 11 O -0.325 6.325 12 C 0.031 3.969 13 C 0.049 3.951 14 C -0.449 4.449 15 H 0.070 0.930 16 C 0.074 3.926 17 N -0.816 5.816 18 Si 0.977 3.023 19 H -0.279 1.279 20 H -0.241 1.241 21 H -0.292 1.292 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.113 0.887 25 H 0.176 0.824 26 H 0.154 0.846 27 H 0.110 0.890 28 H 0.028 0.972 29 H 0.053 0.947 30 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.588 5.745 -2.558 7.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.233 6.233 3 C -0.058 4.058 4 C -0.124 4.124 5 N -0.225 5.225 6 C -0.127 4.127 7 C 0.281 3.719 8 F -0.184 7.184 9 F -0.177 7.177 10 C -0.061 4.061 11 O -0.240 6.240 12 C -0.063 4.063 13 C 0.040 3.960 14 C -0.478 4.478 15 H 0.088 0.912 16 C -0.146 4.146 17 N -0.441 5.441 18 Si 0.803 3.197 19 H -0.205 1.205 20 H -0.165 1.165 21 H -0.221 1.221 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.131 0.869 25 H 0.193 0.807 26 H 0.171 0.829 27 H 0.128 0.872 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.853 6.034 -2.450 8.122 hybrid contribution 0.136 -1.005 0.385 1.085 sum -4.717 5.028 -2.065 7.197 Atomic orbital electron populations 1.23342 0.77501 1.05206 1.02477 1.85835 1.22443 1.26548 1.88523 1.20177 0.92506 0.85695 1.07471 1.22639 1.00400 0.86230 1.03098 1.66993 1.09542 1.26561 1.19362 1.21814 0.91236 0.94734 1.04866 1.20182 0.74094 0.83661 0.93944 1.92946 1.68570 1.68630 1.88269 1.93013 1.47916 1.96735 1.79987 1.19323 0.84216 0.90690 1.11921 1.85987 1.14661 1.92573 1.30823 1.23085 0.97058 0.99865 0.86285 1.17959 0.90178 0.93490 0.94329 1.19013 1.03846 0.96041 1.28945 0.91235 1.26671 0.96657 0.93063 0.98227 1.69694 1.38933 1.00420 1.35022 0.85135 0.79442 0.79374 0.75725 1.20505 1.16527 1.22107 0.92304 0.90522 0.86892 0.80689 0.82890 0.87179 0.95369 0.92852 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.05 113.37 1.03 1.28 16 2 O -0.32 -13.43 5.79 -90.04 -0.52 -13.95 16 3 C -0.01 -0.48 4.88 23.13 0.11 -0.37 16 4 C 0.03 1.20 10.22 84.71 0.87 2.06 16 5 N -0.51 -21.77 9.91 -183.59 -1.82 -23.58 16 6 C 0.01 0.50 6.59 42.56 0.28 0.78 16 7 C 0.34 11.80 5.64 71.24 0.40 12.20 16 8 F -0.20 -7.41 17.05 44.97 0.77 -6.65 16 9 F -0.20 -7.31 15.29 44.97 0.69 -6.63 16 10 C -0.01 -0.58 5.66 23.13 0.13 -0.45 16 11 O -0.33 -14.53 7.88 -90.19 -0.71 -15.24 16 12 C 0.03 1.09 11.12 113.37 1.26 2.35 16 13 C 0.05 2.49 4.81 -20.93 -0.10 2.39 16 14 C -0.45 -24.58 9.08 23.39 0.21 -24.37 16 15 H 0.07 4.06 7.60 -2.91 -0.02 4.03 16 16 C 0.07 3.86 4.90 85.29 0.42 4.28 16 17 N -0.82 -42.96 13.93 21.85 0.30 -42.66 16 18 Si 0.98 43.95 23.99 68.60 1.65 45.60 16 19 H -0.28 -13.49 6.34 99.48 0.63 -12.86 16 20 H -0.24 -9.56 6.52 99.48 0.65 -8.91 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 H 0.06 1.55 7.88 -2.39 -0.02 1.54 16 23 H 0.08 1.83 7.47 -2.38 -0.02 1.82 16 24 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.18 5.65 6.31 -2.91 -0.02 5.63 16 26 H 0.15 4.02 8.14 -2.39 -0.02 4.00 16 27 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.03 1.05 7.68 -2.39 -0.02 1.03 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.30 14.01 8.30 -92.71 -0.77 13.24 16 Total: -1.00 -64.13 263.55 6.00 -58.13 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.04 Total: 4.84 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 4.61 Total: 0.15 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: -1.52 Total: -66.25 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.23 Total: -29.20 kcal Atomic # 9 Polarization: -14.73 SS G_CDS: 1.45 Total: -13.27 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.65 Total: 45.60 kcal Total: -64.13 6.00 -58.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309208371.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.784 kcal (2) G-P(sol) polarization free energy of solvation -64.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds