Wall clock time and date at job start Mon Mar 30 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35785 * 116.99780 * 2 1 4 4 C 1.38196 * 119.46216 * 180.25760 * 3 2 1 5 5 C 1.40913 * 118.89118 * 180.25119 * 4 3 2 6 6 C 1.41233 * 121.04005 * 179.77407 * 5 4 3 7 7 H 1.08007 * 120.00297 * 204.85709 * 6 5 4 8 8 C 1.40038 * 120.00067 * 24.86214 * 6 5 4 9 9 N 1.30769 * 120.00477 * 202.14050 * 8 6 5 10 10 Si 1.86807 * 119.99945 * 22.13517 * 8 6 5 11 11 H 1.48500 * 109.47087 * 263.26764 * 10 8 6 12 12 H 1.48500 * 109.47025 * 23.26629 * 10 8 6 13 13 H 1.48498 * 109.47090 * 143.26431 * 10 8 6 14 14 C 1.41721 * 117.92444 * 359.50567 * 5 4 3 15 15 O 1.35708 * 120.59228 * 180.27660 * 14 5 4 16 16 C 1.42894 * 117.00487 * 89.99940 * 15 14 5 17 17 C 1.38397 * 118.81345 * 0.24541 * 14 5 4 18 18 C 1.50699 * 119.51938 * 179.97438 * 17 14 5 19 19 F 1.39899 * 109.47035 * 300.00436 * 18 17 14 20 20 F 1.39906 * 109.46783 * 60.00460 * 18 17 14 21 21 N 1.31957 * 120.95897 * 0.02562 * 17 14 5 22 22 H 1.08991 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47151 * 300.00086 * 1 2 3 24 24 H 1.09008 * 109.46545 * 59.99892 * 1 2 3 25 25 H 1.07997 * 120.55981 * 0.02877 * 4 3 2 26 26 H 0.97001 * 119.99209 * 353.03004 * 9 8 6 27 27 H 1.09001 * 109.47620 * 180.02562 * 16 15 14 28 28 H 1.09008 * 109.47014 * 299.99725 * 16 15 14 29 29 H 1.09001 * 109.47407 * 59.99177 * 16 15 14 30 30 H 1.08997 * 109.47100 * 179.97438 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 3.4261 1.2693 -0.0054 5 6 4.0533 2.5312 0.0001 6 6 5.4610 2.6447 -0.0003 7 1 5.9314 3.5323 0.3967 8 6 6.2471 1.6066 -0.5156 9 7 7.4962 1.4875 -0.1473 10 14 5.5113 0.3917 -1.7290 11 1 5.0711 -0.8271 -1.0038 12 1 4.3448 1.0133 -2.4060 13 1 6.5329 0.0234 -2.7418 14 6 3.2273 3.6828 0.0001 15 8 3.7741 4.9249 -0.0004 16 6 4.0351 5.5184 -1.2738 17 6 1.8532 3.5181 0.0000 18 6 0.9599 4.7318 0.0007 19 9 1.2147 5.4978 1.1433 20 9 1.2146 5.4989 -1.1413 21 7 1.3138 2.3138 0.0004 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 4.0147 0.3638 -0.0101 26 1 7.9073 2.1734 0.4018 27 1 4.4709 6.5073 -1.1313 28 1 4.7315 4.8916 -1.8309 29 1 3.1023 5.6087 -1.8306 30 1 -0.0831 4.4153 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309367543.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:09 Heat of formation + Delta-G solvation = -152.737762 kcal Electronic energy + Delta-G solvation = -20086.373257 eV Core-core repulsion = 16518.062755 eV Total energy + Delta-G solvation = -3568.310502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.50599 -46.50155 -39.64581 -37.90811 -36.05162 -34.45665 -31.69740 -29.77999 -27.36656 -26.58976 -25.47068 -24.93321 -21.63968 -21.10475 -18.75540 -17.47367 -16.92132 -16.90537 -16.72528 -16.05378 -15.47896 -15.28046 -14.59577 -14.24324 -13.99672 -13.59765 -13.40254 -13.00721 -12.88247 -12.61762 -12.34565 -12.18122 -12.07633 -11.38522 -11.27284 -11.01003 -10.57005 -10.43471 -10.39200 -9.88755 -9.58601 -9.49873 -8.59688 -8.37342 -7.66229 -7.48967 -5.01309 1.91817 2.34042 3.07627 3.20774 3.39044 3.79279 3.80332 4.11999 4.16206 4.59844 4.65038 5.06531 5.18504 5.58049 5.63840 5.71487 5.75163 6.01488 6.04810 6.07068 6.26530 6.30389 6.45086 6.71981 6.79875 7.16374 7.19899 7.75432 7.97736 8.08795 8.28080 8.55795 8.83340 9.62483 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.010849 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.829755 B = 2580.224815 C = 3767.905962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.317 6.317 3 C 0.337 3.663 4 C -0.297 4.297 5 C 0.111 3.889 6 C -0.465 4.465 7 H 0.093 0.907 8 C 0.045 3.955 9 N -0.780 5.780 10 Si 1.070 2.930 11 H -0.268 1.268 12 H -0.262 1.262 13 H -0.284 1.284 14 C -0.035 4.035 15 O -0.317 6.317 16 C 0.026 3.974 17 C 0.078 3.922 18 C 0.332 3.668 19 F -0.195 7.195 20 F -0.201 7.201 21 N -0.600 5.600 22 H 0.084 0.916 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.124 0.876 26 H 0.294 0.706 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.346 1.220 -2.478 8.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.226 6.226 3 C 0.163 3.837 4 C -0.320 4.320 5 C 0.103 3.897 6 C -0.494 4.494 7 H 0.111 0.889 8 C -0.180 4.180 9 N -0.400 5.400 10 Si 0.894 3.106 11 H -0.194 1.194 12 H -0.186 1.186 13 H -0.211 1.211 14 C -0.085 4.085 15 O -0.232 6.232 16 C -0.069 4.069 17 C -0.055 4.055 18 C 0.277 3.723 19 F -0.176 7.176 20 F -0.182 7.182 21 N -0.331 5.331 22 H 0.102 0.898 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.141 0.859 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.642 -0.299 -3.099 9.186 hybrid contribution 0.515 1.660 0.794 1.911 sum -8.127 1.360 -2.305 8.556 Atomic orbital electron populations 1.22634 0.79029 1.01530 1.01828 1.86229 1.21538 1.25810 1.88991 1.19110 0.88750 0.83180 0.92613 1.20733 0.90963 0.98141 1.22120 1.17874 0.94116 0.89260 0.88478 1.20723 0.90635 1.05173 1.32876 0.88874 1.27532 0.94811 0.98655 0.96993 1.70489 1.14112 1.30830 1.24616 0.83603 0.75642 0.75713 0.75601 1.19414 1.18628 1.21148 1.19156 0.89672 0.85642 1.14035 1.85973 1.81659 1.27821 1.27765 1.23066 1.00260 0.97157 0.86460 1.20778 0.91080 0.91599 1.01994 1.19957 0.99182 0.82055 0.71116 1.92988 1.96091 1.77478 1.51068 1.92899 1.95787 1.77823 1.51680 1.66401 1.39787 0.97053 1.29898 0.89802 0.92978 0.93031 0.85887 0.89403 0.90551 0.93994 0.93355 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 10.38 101.05 1.05 1.74 16 2 O -0.32 -6.44 10.47 -19.07 -0.20 -6.64 16 3 C 0.34 7.75 7.47 -17.31 -0.13 7.62 16 4 C -0.30 -7.25 7.29 -38.58 -0.28 -7.53 16 5 C 0.11 2.81 5.22 -106.42 -0.56 2.26 16 6 C -0.47 -11.98 9.15 -37.77 -0.35 -12.32 16 7 H 0.09 2.50 7.88 -52.48 -0.41 2.09 16 8 C 0.04 1.10 5.40 -17.33 -0.09 1.01 16 9 N -0.78 -19.48 13.65 55.55 0.76 -18.72 16 10 Si 1.07 23.24 24.91 -169.99 -4.23 19.01 16 11 H -0.27 -5.62 6.69 56.52 0.38 -5.25 16 12 H -0.26 -5.76 6.88 56.52 0.39 -5.37 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 C -0.03 -0.84 5.66 -38.19 -0.22 -1.06 16 15 O -0.32 -7.39 8.93 -18.83 -0.17 -7.56 16 16 C 0.03 0.50 10.76 101.05 1.09 1.58 16 17 C 0.08 1.74 6.29 -82.48 -0.52 1.22 16 18 C 0.33 6.19 5.22 36.01 0.19 6.38 16 19 F -0.19 -3.83 16.95 2.25 0.04 -3.79 16 20 F -0.20 -3.70 14.28 2.25 0.03 -3.67 16 21 N -0.60 -13.31 9.05 -9.58 -0.09 -13.39 16 22 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 24 H 0.05 0.77 8.10 -51.92 -0.42 0.35 16 25 H 0.12 2.95 4.50 -52.49 -0.24 2.71 16 26 H 0.29 7.10 8.73 -40.82 -0.36 6.74 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.05 0.90 5.63 -51.93 -0.29 0.61 16 30 H 0.12 1.78 8.10 -51.93 -0.42 1.35 16 LS Contribution 267.23 15.07 4.03 4.03 Total: -1.00 -27.62 267.23 -2.31 -29.93 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -2.66 Total: -0.09 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 0.18 Total: 0.90 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.67 Total: -32.11 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.37 Total: -14.20 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.07 Total: -7.46 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.23 Total: 19.01 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.62 -2.31 -29.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309367543.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.807 kcal (2) G-P(sol) polarization free energy of solvation -27.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds