Wall clock time and date at job start Mon Mar 30 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35785 * 116.99780 * 2 1 4 4 C 1.38196 * 119.46216 * 180.25760 * 3 2 1 5 5 C 1.40913 * 118.89118 * 180.25119 * 4 3 2 6 6 C 1.41233 * 121.04005 * 179.77407 * 5 4 3 7 7 H 1.08007 * 120.00297 * 204.85709 * 6 5 4 8 8 C 1.40038 * 120.00067 * 24.86214 * 6 5 4 9 9 N 1.30769 * 120.00477 * 202.14050 * 8 6 5 10 10 Si 1.86807 * 119.99945 * 22.13517 * 8 6 5 11 11 H 1.48500 * 109.47087 * 263.26764 * 10 8 6 12 12 H 1.48500 * 109.47025 * 23.26629 * 10 8 6 13 13 H 1.48498 * 109.47090 * 143.26431 * 10 8 6 14 14 C 1.41721 * 117.92444 * 359.50567 * 5 4 3 15 15 O 1.35708 * 120.59228 * 180.27660 * 14 5 4 16 16 C 1.42894 * 117.00487 * 89.99940 * 15 14 5 17 17 C 1.38397 * 118.81345 * 0.24541 * 14 5 4 18 18 C 1.50699 * 119.51938 * 179.97438 * 17 14 5 19 19 F 1.39899 * 109.47035 * 300.00436 * 18 17 14 20 20 F 1.39906 * 109.46783 * 60.00460 * 18 17 14 21 21 N 1.31957 * 120.95897 * 0.02562 * 17 14 5 22 22 H 1.08991 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47151 * 300.00086 * 1 2 3 24 24 H 1.09008 * 109.46545 * 59.99892 * 1 2 3 25 25 H 1.07997 * 120.55981 * 0.02877 * 4 3 2 26 26 H 0.97001 * 119.99209 * 353.03004 * 9 8 6 27 27 H 1.09001 * 109.47620 * 180.02562 * 16 15 14 28 28 H 1.09008 * 109.47014 * 299.99725 * 16 15 14 29 29 H 1.09001 * 109.47407 * 59.99177 * 16 15 14 30 30 H 1.08997 * 109.47100 * 179.97438 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 3.4261 1.2693 -0.0054 5 6 4.0533 2.5312 0.0001 6 6 5.4610 2.6447 -0.0003 7 1 5.9314 3.5323 0.3967 8 6 6.2471 1.6066 -0.5156 9 7 7.4962 1.4875 -0.1473 10 14 5.5113 0.3917 -1.7290 11 1 5.0711 -0.8271 -1.0038 12 1 4.3448 1.0133 -2.4060 13 1 6.5329 0.0234 -2.7418 14 6 3.2273 3.6828 0.0001 15 8 3.7741 4.9249 -0.0004 16 6 4.0351 5.5184 -1.2738 17 6 1.8532 3.5181 0.0000 18 6 0.9599 4.7318 0.0007 19 9 1.2147 5.4978 1.1433 20 9 1.2146 5.4989 -1.1413 21 7 1.3138 2.3138 0.0004 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 4.0147 0.3638 -0.0101 26 1 7.9073 2.1734 0.4018 27 1 4.4709 6.5073 -1.1313 28 1 4.7315 4.8916 -1.8309 29 1 3.1023 5.6087 -1.8306 30 1 -0.0831 4.4153 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309367543.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:09 Heat of formation + Delta-G solvation = -172.518573 kcal Electronic energy + Delta-G solvation = -20087.231017 eV Core-core repulsion = 16518.062755 eV Total energy + Delta-G solvation = -3569.168262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.99661 -47.99730 -41.39508 -39.57398 -37.75323 -36.31652 -33.53345 -31.47441 -28.88071 -28.20580 -27.15657 -26.55661 -23.36801 -22.87491 -20.55594 -19.08815 -18.63354 -18.60870 -18.27577 -17.59822 -17.15907 -16.83124 -16.24428 -15.92456 -15.58810 -15.37012 -15.01810 -14.63599 -14.37751 -14.32307 -13.96032 -13.84404 -13.71410 -12.98636 -12.70755 -12.64971 -12.18148 -12.10961 -11.91570 -11.67689 -11.37296 -11.27614 -10.45649 -10.17696 -9.56843 -9.24979 -6.95578 0.11471 0.48526 1.31692 1.46946 1.68221 2.03809 2.21293 2.33515 2.60921 2.86369 3.14896 3.27253 3.67250 4.05627 4.15879 4.34592 4.52277 4.53332 4.53570 4.57667 4.65193 4.76656 4.79930 4.89833 5.04088 5.27075 5.30409 5.85366 6.09151 6.33121 6.41314 6.77838 7.02641 7.70882 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.010849 C = 0.007429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.829755 B = 2580.224815 C = 3767.905962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.324 6.324 3 C 0.336 3.664 4 C -0.313 4.313 5 C 0.097 3.903 6 C -0.491 4.491 7 H 0.067 0.933 8 C 0.023 3.977 9 N -0.797 5.797 10 Si 1.097 2.903 11 H -0.256 1.256 12 H -0.269 1.269 13 H -0.267 1.267 14 C -0.058 4.058 15 O -0.334 6.334 16 C 0.024 3.976 17 C 0.074 3.926 18 C 0.336 3.664 19 F -0.201 7.201 20 F -0.198 7.198 21 N -0.584 5.584 22 H 0.124 0.876 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.124 0.876 26 H 0.290 0.710 27 H 0.105 0.895 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 0.737 -3.082 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.233 6.233 3 C 0.161 3.839 4 C -0.336 4.336 5 C 0.089 3.911 6 C -0.520 4.520 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.418 5.418 10 Si 0.917 3.083 11 H -0.181 1.181 12 H -0.194 1.194 13 H -0.193 1.193 14 C -0.108 4.108 15 O -0.249 6.249 16 C -0.070 4.070 17 C -0.060 4.060 18 C 0.282 3.718 19 F -0.182 7.182 20 F -0.180 7.180 21 N -0.315 5.315 22 H 0.142 0.858 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.141 0.859 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.889 -0.783 -3.694 11.525 hybrid contribution 1.055 1.849 1.010 2.356 sum -9.834 1.066 -2.685 10.249 Atomic orbital electron populations 1.23037 0.76086 1.04418 1.02210 1.86225 1.24413 1.24207 1.88407 1.19235 0.88674 0.84312 0.91632 1.20838 0.92087 0.97782 1.22865 1.18114 0.94187 0.90432 0.88328 1.20584 0.91289 1.05024 1.35119 0.91495 1.28355 0.94665 0.99440 0.97285 1.70531 1.14510 1.31110 1.25647 0.83268 0.75365 0.74864 0.74775 1.18095 1.19355 1.19339 1.19423 0.90696 0.85740 1.14896 1.85918 1.81816 1.27467 1.29748 1.23232 1.00650 0.97967 0.85158 1.21375 0.91156 0.93034 1.00397 1.20197 1.00215 0.80541 0.70867 1.92980 1.96243 1.77473 1.51514 1.92900 1.95894 1.77602 1.51577 1.66563 1.39246 0.96840 1.28811 0.85817 0.92638 0.92515 0.85890 0.89887 0.87689 0.95187 0.92367 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.38 113.37 1.18 2.17 16 2 O -0.32 -12.33 10.47 -91.14 -0.95 -13.28 16 3 C 0.34 14.87 7.47 84.59 0.63 15.50 16 4 C -0.31 -15.17 7.29 22.92 0.17 -15.01 16 5 C 0.10 5.00 5.22 -21.03 -0.11 4.89 16 6 C -0.49 -26.15 9.15 23.44 0.21 -25.94 16 7 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 8 C 0.02 1.17 5.40 85.29 0.46 1.63 16 9 N -0.80 -40.73 13.65 21.84 0.30 -40.43 16 10 Si 1.10 46.69 24.91 68.60 1.71 48.40 16 11 H -0.26 -10.29 6.69 99.48 0.67 -9.63 16 12 H -0.27 -11.63 6.88 99.48 0.68 -10.95 16 13 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 14 C -0.06 -2.79 5.66 23.17 0.13 -2.66 16 15 O -0.33 -15.55 8.93 -90.29 -0.81 -16.36 16 16 C 0.02 0.93 10.76 113.37 1.22 2.15 16 17 C 0.07 3.16 6.29 42.58 0.27 3.43 16 18 C 0.34 11.58 5.22 71.24 0.37 11.95 16 19 F -0.20 -7.44 16.95 44.97 0.76 -6.68 16 20 F -0.20 -6.79 14.28 44.97 0.64 -6.15 16 21 N -0.58 -24.49 9.05 -296.94 -2.69 -27.18 16 22 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 24 H 0.06 1.48 8.10 -2.38 -0.02 1.46 16 25 H 0.12 5.86 4.50 -2.91 -0.01 5.84 16 26 H 0.29 14.56 8.73 -92.71 -0.81 13.75 16 27 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.06 2.09 5.63 -2.39 -0.01 2.07 16 30 H 0.16 4.18 8.10 -2.39 -0.02 4.16 16 Total: -1.00 -59.22 267.23 4.58 -54.64 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.08 Total: 8.91 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 4.53 Total: -1.88 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -2.39 Total: -67.61 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.76 Total: -29.64 kcal Atomic # 9 Polarization: -14.23 SS G_CDS: 1.40 Total: -12.82 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.71 Total: 48.40 kcal Total: -59.22 4.58 -54.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309367543.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.876 kcal (2) G-P(sol) polarization free energy of solvation -59.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds