Wall clock time and date at job start Mon Mar 30 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35768 * 117.00189 * 2 1 4 4 N 1.32149 * 119.69203 * 359.97438 * 3 2 1 5 5 C 1.32232 * 122.33885 * 180.02562 * 4 3 2 6 6 C 1.36376 * 121.42979 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.41165 * 179.72707 * 6 5 4 8 8 F 1.39896 * 109.47691 * 22.64734 * 7 6 5 9 9 F 1.39900 * 109.46848 * 142.64909 * 7 6 5 10 10 C 1.41213 * 119.17109 * 0.02562 * 6 5 4 11 11 C 1.41241 * 121.03591 * 179.97438 * 10 6 5 12 12 H 1.07994 * 120.00215 * 319.89509 * 11 10 6 13 13 C 1.40030 * 119.99782 * 139.89422 * 11 10 6 14 14 N 1.30778 * 120.00003 * 341.21394 * 13 11 10 15 15 Si 1.86798 * 120.00105 * 161.21442 * 13 11 10 16 16 H 1.48500 * 109.47040 * 90.00144 * 15 13 11 17 17 H 1.48499 * 109.47561 * 209.99824 * 15 13 11 18 18 H 1.48498 * 109.47206 * 330.00112 * 15 13 11 19 19 C 1.39331 * 119.69201 * 180.02562 * 3 2 1 20 20 O 1.35701 * 120.73448 * 0.02562 * 19 3 2 21 21 C 1.42901 * 117.00085 * 91.79151 * 20 19 3 22 22 H 1.08993 * 109.47094 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47168 * 300.00825 * 1 2 3 24 24 H 1.09007 * 109.46397 * 60.00095 * 1 2 3 25 25 H 1.07998 * 119.28748 * 179.97438 * 5 4 3 26 26 H 1.09007 * 109.47597 * 262.64331 * 7 6 5 27 27 H 0.97004 * 119.99924 * 179.97438 * 14 13 11 28 28 H 1.08999 * 109.47106 * 179.97438 * 21 20 19 29 29 H 1.09000 * 109.46682 * 299.99298 * 21 20 19 30 30 H 1.08996 * 109.47337 * 59.99547 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 7 1.3198 2.3141 -0.0005 5 6 1.8651 3.5188 -0.0010 6 6 3.2185 3.6867 -0.0006 7 6 3.8154 5.0704 -0.0074 8 9 2.8821 5.9835 0.4946 9 9 4.9621 5.0874 0.7940 10 6 4.0534 2.5479 0.0000 11 6 5.4600 2.6761 -0.0001 12 1 5.9328 3.4372 -0.6029 13 6 6.2414 1.8163 0.7816 14 7 5.6974 1.1564 1.7710 15 14 8.0608 1.6119 0.4111 16 1 8.8386 2.6156 1.1810 17 1 8.4947 0.2458 0.7992 18 1 8.2957 1.8118 -1.0415 19 6 3.4372 1.2751 -0.0005 20 8 4.1847 0.1425 -0.0016 21 6 4.5748 -0.3762 -1.2747 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8901 25 1 1.2249 4.3885 -0.0019 26 1 4.0813 5.3465 -1.0278 27 1 6.2387 0.5605 2.3122 28 1 5.1667 -1.2804 -1.1328 29 1 3.6853 -0.6119 -1.8590 30 1 5.1701 0.3681 -1.8034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309498626.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:33 Heat of formation + Delta-G solvation = -162.128805 kcal Electronic energy + Delta-G solvation = -20217.950431 eV Core-core repulsion = 16649.232703 eV Total energy + Delta-G solvation = -3568.717728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.61967 -47.62493 -41.17707 -38.82627 -38.09117 -35.58777 -33.01852 -31.26350 -28.90004 -27.93137 -26.82254 -26.31369 -23.36772 -22.47431 -19.92498 -18.60613 -18.38383 -18.15874 -17.90751 -17.04908 -16.87973 -16.81670 -16.51156 -15.62691 -15.54237 -14.88324 -14.50697 -14.28128 -14.12946 -13.94210 -13.85758 -13.57492 -13.14898 -12.88508 -12.69976 -12.58231 -12.53183 -12.01074 -11.89511 -11.78438 -11.02255 -10.94316 -10.05860 -9.72933 -8.98153 -8.70320 -6.54820 0.52182 0.81804 1.41155 1.48899 1.54000 2.20969 2.42134 2.72452 3.15944 3.19779 3.48666 3.77645 3.85417 4.16549 4.36233 4.49182 4.51249 4.54619 4.62202 4.67836 4.77132 4.79961 4.93741 5.16487 5.33875 5.52435 5.67903 6.20222 6.42069 6.61011 6.77289 7.19717 7.37624 8.31795 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.012197 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.018578 B = 2295.014119 C = 3779.871611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.327 6.327 3 C 0.294 3.706 4 N -0.613 5.613 5 C 0.163 3.837 6 C -0.347 4.347 7 C 0.343 3.657 8 F -0.215 7.215 9 F -0.208 7.208 10 C 0.138 3.862 11 C -0.458 4.458 12 H 0.094 0.906 13 C 0.056 3.944 14 N -0.775 5.775 15 Si 0.965 3.035 16 H -0.265 1.265 17 H -0.269 1.269 18 H -0.249 1.249 19 C -0.061 4.061 20 O -0.305 6.305 21 C 0.033 3.967 22 H 0.118 0.882 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.164 0.836 26 H 0.136 0.864 27 H 0.290 0.710 28 H 0.093 0.907 29 H 0.031 0.969 30 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 0.680 -5.163 5.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.236 6.236 3 C 0.120 3.880 4 N -0.343 5.343 5 C 0.011 3.989 6 C -0.354 4.354 7 C 0.289 3.711 8 F -0.196 7.196 9 F -0.190 7.190 10 C 0.130 3.870 11 C -0.487 4.487 12 H 0.112 0.888 13 C -0.167 4.167 14 N -0.397 5.397 15 Si 0.785 3.215 16 H -0.189 1.189 17 H -0.193 1.193 18 H -0.172 1.172 19 C -0.110 4.110 20 O -0.220 6.220 21 C -0.062 4.062 22 H 0.136 0.864 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.182 0.818 26 H 0.153 0.847 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.049 0.951 30 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.056 0.047 -4.773 5.197 hybrid contribution 1.166 0.080 0.095 1.173 sum -0.890 0.128 -4.678 4.763 Atomic orbital electron populations 1.22894 0.77121 1.03688 1.01595 1.86251 1.23525 1.25289 1.88498 1.20446 0.88894 0.85045 0.93589 1.67134 1.39386 0.98118 1.29614 1.21553 0.91967 0.93595 0.91774 1.21084 0.95448 0.95443 1.23420 1.19979 0.74234 0.84628 0.92308 1.92884 1.67261 1.69163 1.90331 1.92962 1.51583 1.96882 1.77524 1.17816 0.94470 0.88853 0.85901 1.19547 0.90187 1.15447 1.23503 0.88779 1.26524 1.04983 0.92357 0.92791 1.69766 1.40461 1.18059 1.11398 0.85459 0.76818 0.78631 0.80571 1.18937 1.19341 1.17242 1.18760 0.85581 0.87831 1.18864 1.86091 1.69846 1.38735 1.27290 1.22869 0.98479 0.98361 0.86457 0.86375 0.93585 0.92809 0.81849 0.84738 0.89945 0.88857 0.95064 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.39 10.38 113.37 1.18 2.57 16 2 O -0.33 -14.58 10.28 -77.35 -0.80 -15.38 16 3 C 0.29 14.47 7.51 84.91 0.64 15.11 16 4 N -0.61 -28.29 9.18 -309.73 -2.84 -31.13 16 5 C 0.16 7.07 10.49 84.20 0.88 7.95 16 6 C -0.35 -15.78 5.76 -19.57 -0.11 -15.89 16 7 C 0.34 13.19 5.30 71.23 0.38 13.57 16 8 F -0.21 -7.87 16.27 44.97 0.73 -7.14 16 9 F -0.21 -9.17 14.99 44.97 0.67 -8.49 16 10 C 0.14 7.00 5.34 -21.03 -0.11 6.88 16 11 C -0.46 -22.62 6.86 23.44 0.16 -22.46 16 12 H 0.09 4.37 7.36 -2.91 -0.02 4.35 16 13 C 0.06 2.68 4.52 85.28 0.39 3.07 16 14 N -0.77 -40.36 11.33 21.84 0.25 -40.11 16 15 Si 0.96 36.53 29.60 68.60 2.03 38.56 16 16 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 17 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 18 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 19 C -0.06 -3.19 5.27 23.31 0.12 -3.06 16 20 O -0.31 -15.42 7.40 -76.60 -0.57 -15.99 16 21 C 0.03 1.36 11.13 113.37 1.26 2.62 16 22 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 23 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 24 H 0.05 1.71 8.11 -2.38 -0.02 1.69 16 25 H 0.16 5.97 7.37 -2.91 -0.02 5.95 16 26 H 0.14 4.14 8.14 -2.38 -0.02 4.12 16 27 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 28 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -61.80 272.88 5.43 -56.37 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.17 Total: 12.95 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 4.78 Total: 10.36 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -2.60 Total: -71.24 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.36 Total: -31.37 kcal Atomic # 9 Polarization: -17.04 SS G_CDS: 1.41 Total: -15.63 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -61.80 5.43 -56.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309498626.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.758 kcal (2) G-P(sol) polarization free energy of solvation -61.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds