Wall clock time and date at job start Mon Mar 30 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35522 * 117.00185 * 2 1 4 4 N 1.32695 * 119.36308 * 359.97438 * 3 2 1 5 5 C 1.31475 * 122.06133 * 179.97438 * 4 3 2 6 6 C 1.40641 * 120.51182 * 0.02562 * 5 4 3 7 7 C 1.41113 * 120.65216 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00333 * 155.99622 * 7 6 5 9 9 C 1.39879 * 119.99534 * 335.99190 * 7 6 5 10 10 N 1.30925 * 119.99929 * 341.65939 * 9 7 6 11 11 Si 1.86798 * 119.99967 * 161.65702 * 9 7 6 12 12 H 1.48501 * 109.47249 * 90.00045 * 11 9 7 13 13 H 1.48505 * 109.47270 * 210.00186 * 11 9 7 14 14 H 1.48497 * 109.47026 * 330.00042 * 11 9 7 15 15 C 1.41876 * 118.70136 * 359.75122 * 6 5 4 16 16 O 1.35552 * 120.93471 * 180.27411 * 15 6 5 17 17 C 1.42894 * 117.00113 * 270.24082 * 16 15 6 18 18 C 1.38485 * 118.13574 * 0.50527 * 15 6 5 19 19 C 1.50702 * 120.34322 * 179.74501 * 18 15 6 20 20 F 1.39894 * 109.46995 * 59.72776 * 19 18 15 21 21 F 1.39897 * 109.47040 * 299.72569 * 19 18 15 22 22 H 1.09005 * 109.47012 * 300.00479 * 1 2 3 23 23 H 1.08998 * 109.46974 * 59.99756 * 1 2 3 24 24 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.74330 * 180.02562 * 5 4 3 26 26 H 0.97000 * 119.99909 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.47592 * 180.02562 * 17 16 15 28 28 H 1.09001 * 109.46933 * 299.99909 * 17 16 15 29 29 H 1.09002 * 109.47463 * 59.99353 * 17 16 15 30 30 H 1.09001 * 109.47072 * 179.72498 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 7 1.3093 2.3123 -0.0005 5 6 1.8504 3.5105 0.0000 6 6 3.2486 3.6626 0.0005 7 6 3.8325 4.9473 0.0015 8 1 4.8336 5.0851 0.3824 9 6 3.1146 6.0421 -0.4908 10 7 2.0777 5.8496 -1.2668 11 14 3.6351 7.7789 -0.0412 12 1 4.6067 8.2803 -1.0461 13 1 2.4425 8.6636 -0.0213 14 1 4.2698 7.7735 1.3013 15 6 4.0605 2.4992 0.0059 16 8 5.4127 2.5931 0.0122 17 6 6.0656 2.6417 -1.2579 18 6 3.4328 1.2647 -0.0003 19 6 4.2470 -0.0034 -0.0008 20 9 5.0538 -0.0399 1.1416 21 9 5.0540 -0.0390 -1.1430 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.2163 4.3848 -0.0001 26 1 1.5801 6.6089 -1.6085 27 1 7.1430 2.7158 -1.1101 28 1 5.8376 1.7351 -1.8185 29 1 5.7142 3.5108 -1.8141 30 1 3.5786 -0.8643 -0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309507312.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:58 Heat of formation + Delta-G solvation = -167.855691 kcal Electronic energy + Delta-G solvation = -20062.093654 eV Core-core repulsion = 16493.127590 eV Total energy + Delta-G solvation = -3568.966064 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.88651 -47.88435 -41.23273 -39.46062 -37.83839 -35.77757 -33.12859 -31.90340 -28.65776 -27.85469 -26.87127 -26.75589 -23.14516 -22.95066 -19.62264 -19.37259 -18.98185 -18.20157 -17.71266 -17.24494 -16.80121 -16.74121 -16.54821 -16.04814 -15.75427 -15.06436 -14.91673 -14.43743 -14.28068 -14.02075 -13.86156 -13.72270 -13.32890 -13.04316 -12.81332 -12.69727 -12.48200 -12.19708 -11.87502 -11.76220 -11.19816 -10.75458 -10.33820 -10.26261 -9.39946 -8.83615 -6.41499 0.26572 0.61944 1.39573 1.46655 1.55611 2.16703 2.32544 2.53742 2.89448 3.01980 3.32122 3.50316 3.81132 3.95797 4.16794 4.49532 4.54688 4.58410 4.58993 4.62900 4.76307 4.83589 4.91413 4.97029 5.14205 5.30244 5.69644 6.12982 6.30155 6.55906 6.66736 6.85901 7.33652 8.15661 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.021360 B = 0.008613 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.536388 B = 3250.195583 C = 4240.592744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.327 6.327 3 C 0.215 3.785 4 N -0.525 5.525 5 C 0.085 3.915 6 C 0.000 4.000 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.039 3.961 10 N -0.813 5.813 11 Si 0.987 3.013 12 H -0.261 1.261 13 H -0.261 1.261 14 H -0.260 1.260 15 C 0.051 3.949 16 O -0.333 6.333 17 C 0.030 3.970 18 C -0.231 4.231 19 C 0.334 3.666 20 F -0.208 7.208 21 F -0.207 7.207 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.127 0.873 25 H 0.157 0.843 26 H 0.298 0.702 27 H 0.111 0.889 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -4.475 -0.138 4.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.237 6.237 3 C 0.039 3.961 4 N -0.246 5.246 5 C -0.077 4.077 6 C -0.005 4.005 7 C -0.484 4.484 8 H 0.100 0.900 9 C -0.178 4.178 10 N -0.438 5.438 11 Si 0.807 3.193 12 H -0.185 1.185 13 H -0.185 1.185 14 H -0.184 1.184 15 C 0.000 4.000 16 O -0.249 6.249 17 C -0.064 4.064 18 C -0.235 4.235 19 C 0.280 3.720 20 F -0.189 7.189 21 F -0.189 7.189 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.145 0.855 25 H 0.174 0.826 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.644 -4.740 -0.140 4.786 hybrid contribution 0.754 1.070 -0.235 1.330 sum 0.110 -3.670 -0.375 3.691 Atomic orbital electron populations 1.22860 0.76703 1.03962 1.01315 1.85916 1.23594 1.24027 1.90167 1.18737 0.87286 0.85186 1.04842 1.66962 1.40822 0.99094 1.17706 1.22720 0.92849 0.92155 1.00002 1.19015 0.93093 0.94012 0.94399 1.19523 1.02251 0.91218 1.35384 0.89952 1.26812 0.93691 1.05795 0.91469 1.69786 1.16125 1.36316 1.21577 0.85113 0.79220 0.75044 0.79955 1.18536 1.18465 1.18398 1.18540 0.83659 0.90807 1.07037 1.85823 1.15252 1.93799 1.30041 1.23165 0.97911 1.00490 0.84804 1.20426 0.92389 0.95312 1.15367 1.20167 0.83338 0.97930 0.70592 1.92945 1.76492 1.97665 1.51795 1.92876 1.76564 1.97487 1.51939 0.93592 0.93830 0.85500 0.82567 0.89047 0.87095 0.93197 0.94778 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.40 10.37 113.37 1.18 2.57 16 2 O -0.33 -12.47 9.22 -88.25 -0.81 -13.28 16 3 C 0.21 9.85 7.47 84.74 0.63 10.48 16 4 N -0.53 -25.55 9.15 -306.81 -2.81 -28.36 16 5 C 0.08 4.36 9.89 85.33 0.84 5.21 16 6 C 0.00 -0.01 5.60 -21.09 -0.12 -0.13 16 7 C -0.45 -23.21 8.77 23.37 0.21 -23.00 16 8 H 0.08 4.20 7.70 -2.91 -0.02 4.17 16 9 C 0.04 1.83 5.14 85.23 0.44 2.27 16 10 N -0.81 -38.78 10.98 21.82 0.24 -38.54 16 11 Si 0.99 35.34 29.60 68.60 2.03 37.37 16 12 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 13 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 14 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 15 C 0.05 2.57 5.69 23.23 0.13 2.70 16 16 O -0.33 -15.76 9.03 -88.57 -0.80 -16.56 16 17 C 0.03 1.20 10.81 113.37 1.23 2.42 16 18 C -0.23 -10.70 5.40 -19.63 -0.11 -10.80 16 19 C 0.33 13.04 5.11 71.24 0.36 13.40 16 20 F -0.21 -8.46 17.02 44.97 0.77 -7.70 16 21 F -0.21 -8.03 14.49 44.97 0.65 -7.38 16 22 H 0.05 1.42 8.10 -2.38 -0.02 1.40 16 23 H 0.04 1.37 8.10 -2.39 -0.02 1.35 16 24 H 0.13 2.63 8.14 -2.39 -0.02 2.62 16 25 H 0.16 8.11 6.15 -2.91 -0.02 8.09 16 26 H 0.30 12.68 8.30 -92.71 -0.77 11.91 16 27 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 28 H 0.05 1.92 5.74 -2.39 -0.01 1.90 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.15 4.74 6.99 -2.39 -0.02 4.72 16 Total: -1.00 -58.56 270.53 5.24 -53.32 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.18 Total: 16.01 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 4.79 Total: 5.12 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -2.57 Total: -66.90 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -1.61 Total: -29.84 kcal Atomic # 9 Polarization: -16.49 SS G_CDS: 1.42 Total: -15.07 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Total: -58.56 5.24 -53.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309507312.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.536 kcal (2) G-P(sol) polarization free energy of solvation -58.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds