Wall clock time and date at job start Mon Mar 30 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47653 * 2 1 4 4 C 1.50704 * 109.47128 * 119.99945 * 2 1 3 5 5 H 1.07998 * 120.00092 * 120.00012 * 4 2 1 6 6 C 1.37881 * 119.99991 * 299.99867 * 4 2 1 7 7 N 1.31510 * 119.99886 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00072 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47128 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47094 * 119.99902 * 8 6 4 11 11 H 1.48496 * 109.47319 * 240.00072 * 8 6 4 12 12 S 1.81003 * 109.47277 * 239.99675 * 2 1 3 13 13 C 1.76203 * 99.99702 * 65.00012 * 12 2 1 14 14 C 1.40311 * 119.23579 * 180.02562 * 13 12 2 15 15 C 1.36170 * 119.87310 * 180.02562 * 14 13 12 16 16 C 1.41038 * 118.30536 * 0.02562 * 15 14 13 17 17 C 1.40325 * 121.24847 * 180.02562 * 16 15 14 18 18 C 1.36220 * 119.64665 * 180.02562 * 17 16 15 19 19 C 1.39279 * 120.84730 * 359.96101 * 18 17 16 20 20 C 1.36145 * 121.02672 * 0.02562 * 19 18 17 21 21 C 1.40536 * 119.76186 * 0.02562 * 20 19 18 22 22 N 1.31793 * 119.23834 * 359.97438 * 13 12 2 23 23 H 1.08996 * 109.47048 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46750 * 300.00270 * 1 2 3 25 25 H 1.08995 * 109.47165 * 60.00129 * 1 2 3 26 26 H 0.97003 * 120.00022 * 180.02562 * 7 6 4 27 27 H 1.08001 * 120.06033 * 0.02562 * 14 13 12 28 28 H 1.08007 * 120.84782 * 179.97438 * 15 14 13 29 29 H 1.08001 * 120.17405 * 359.95129 * 17 16 15 30 30 H 1.08004 * 119.57611 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.48250 * 180.29499 * 19 18 17 32 32 H 1.08000 * 120.11741 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2870 3.6039 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5866 4.8161 12 16 2.1334 -0.8533 -1.4778 13 6 1.5440 0.2422 -2.7257 14 6 1.8009 -0.0524 -4.0733 15 6 1.3519 0.7855 -5.0482 16 6 0.6344 1.9368 -4.6623 17 6 0.1430 2.8418 -5.6156 18 6 -0.5454 3.9438 -5.2064 19 6 -0.7692 4.1843 -3.8529 20 6 -0.3066 3.3268 -2.9020 21 6 0.4088 2.1796 -3.2856 22 7 0.8711 1.3187 -2.3718 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7096 1.1619 3.4844 27 1 2.3537 -0.9420 -4.3367 28 1 1.5410 0.5743 -6.0904 29 1 0.3107 2.6662 -6.6679 30 1 -0.9228 4.6398 -5.9410 31 1 -1.3219 5.0624 -3.5534 32 1 -0.4882 3.5279 -1.8565 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380529205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:33 Heat of formation + Delta-G solvation = 46.680671 kcal Electronic energy + Delta-G solvation = -16205.057391 eV Core-core repulsion = 13642.376722 eV Total energy + Delta-G solvation = -2562.680669 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.39287 -36.77865 -34.05444 -33.19667 -30.45168 -30.21904 -29.59405 -25.26283 -24.17603 -23.35093 -21.84887 -21.20852 -18.32169 -17.10481 -16.98989 -16.10649 -15.20266 -14.54499 -14.46124 -14.20725 -14.03731 -13.57624 -13.18738 -12.90097 -12.52623 -11.96852 -11.70883 -11.49290 -11.42704 -11.00491 -10.89407 -10.66536 -10.46013 -10.28164 -10.09499 -9.39378 -9.00484 -8.89704 -8.81755 -8.42676 -8.16013 -6.76097 -6.11939 -4.22519 0.62316 1.03948 2.23435 2.40049 3.08118 3.25040 3.32677 3.36514 3.56471 4.34905 4.36084 4.66532 4.81998 4.99941 5.05351 5.18650 5.21468 5.33037 5.45976 5.56289 5.98192 6.06667 6.18909 6.21882 6.51716 6.57459 6.70476 6.84938 7.00175 7.02869 7.18183 7.52762 7.73355 7.94504 8.14125 8.21528 8.76537 9.41115 10.93072 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.033099 B = 0.005496 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.748434 B = 5093.502579 C = 5822.773839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.103 3.897 3 H 0.059 0.941 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.072 3.928 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.282 1.282 12 S -0.110 6.110 13 C 0.160 3.840 14 C -0.153 4.153 15 C -0.056 4.056 16 C -0.123 4.123 17 C -0.092 4.092 18 C -0.133 4.133 19 C -0.105 4.105 20 C -0.093 4.093 21 C 0.147 3.853 22 N -0.468 5.468 23 H 0.027 0.973 24 H 0.089 0.911 25 H 0.037 0.963 26 H 0.264 0.736 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 3.801 -14.703 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.077 0.923 4 C -0.557 4.557 5 H 0.083 0.917 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.208 1.208 12 S 0.135 5.865 13 C -0.102 4.102 14 C -0.178 4.178 15 C -0.083 4.083 16 C -0.128 4.128 17 C -0.111 4.111 18 C -0.152 4.152 19 C -0.125 4.125 20 C -0.112 4.112 21 C 0.021 3.979 22 N -0.182 5.182 23 H 0.046 0.954 24 H 0.108 0.892 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.613 3.023 -13.658 14.081 hybrid contribution -0.257 0.564 0.051 0.622 sum -1.870 3.587 -13.608 14.196 Atomic orbital electron populations 1.22004 0.96006 0.99545 1.02120 1.20956 0.96206 0.97484 0.87830 0.92273 1.20762 1.32630 1.13156 0.89119 0.91749 1.24880 0.94701 0.94926 0.98751 1.69915 1.35795 1.22436 1.23749 0.86356 0.78690 0.79646 0.82297 1.19533 1.20769 1.20758 1.85639 1.67416 1.31819 1.01655 1.23773 0.94668 0.95594 0.96179 1.21547 1.02638 1.01410 0.92162 1.21265 0.94917 0.92685 0.99473 1.18770 1.02319 0.97249 0.94418 1.20875 0.97662 0.94141 0.98409 1.20786 1.00452 0.98040 0.95961 1.20828 0.99572 0.99308 0.92822 1.20873 0.97088 0.92654 1.00632 1.19007 0.95960 0.94354 0.88541 1.68783 1.11498 1.02927 1.34999 0.95407 0.89214 0.94374 0.92631 0.84520 0.84621 0.85881 0.86130 0.85740 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.74 37.16 0.32 -3.15 16 2 C 0.10 2.67 2.13 -27.88 -0.06 2.61 16 3 H 0.06 1.69 7.95 -51.92 -0.41 1.28 16 4 C -0.52 -14.28 8.58 -34.44 -0.30 -14.58 16 5 H 0.06 1.77 7.71 -52.49 -0.40 1.36 16 6 C 0.07 1.97 5.30 -17.82 -0.09 1.87 16 7 N -0.88 -24.93 11.32 55.43 0.63 -24.31 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 S -0.11 -2.41 21.41 -107.50 -2.30 -4.71 16 13 C 0.16 3.21 6.78 -16.79 -0.11 3.10 16 14 C -0.15 -2.45 9.74 -39.55 -0.39 -2.83 16 15 C -0.06 -0.78 9.88 -39.26 -0.39 -1.16 16 16 C -0.12 -1.88 5.74 -106.77 -0.61 -2.49 16 17 C -0.09 -1.12 9.77 -39.52 -0.39 -1.50 16 18 C -0.13 -1.51 9.96 -39.92 -0.40 -1.91 16 19 C -0.11 -1.33 9.94 -39.95 -0.40 -1.72 16 20 C -0.09 -1.48 9.98 -39.47 -0.39 -1.88 16 21 C 0.15 2.67 6.60 -84.86 -0.56 2.11 16 22 N -0.47 -9.83 6.76 -9.80 -0.07 -9.90 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 25 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 285.66 15.07 4.30 4.30 Total: -1.00 -29.90 285.66 -9.74 -39.64 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.52 Total: 0.45 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -3.76 Total: -21.54 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.56 Total: -34.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -2.30 Total: -4.71 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.90 -9.74 -39.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380529205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.320 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds