Wall clock time and date at job start Mon Mar 30 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47653 * 2 1 4 4 C 1.50704 * 109.47128 * 119.99945 * 2 1 3 5 5 H 1.07998 * 120.00092 * 120.00012 * 4 2 1 6 6 C 1.37881 * 119.99991 * 299.99867 * 4 2 1 7 7 N 1.31510 * 119.99886 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00072 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47128 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47094 * 119.99902 * 8 6 4 11 11 H 1.48496 * 109.47319 * 240.00072 * 8 6 4 12 12 S 1.81003 * 109.47277 * 239.99675 * 2 1 3 13 13 C 1.76203 * 99.99702 * 65.00012 * 12 2 1 14 14 C 1.40311 * 119.23579 * 180.02562 * 13 12 2 15 15 C 1.36170 * 119.87310 * 180.02562 * 14 13 12 16 16 C 1.41038 * 118.30536 * 0.02562 * 15 14 13 17 17 C 1.40325 * 121.24847 * 180.02562 * 16 15 14 18 18 C 1.36220 * 119.64665 * 180.02562 * 17 16 15 19 19 C 1.39279 * 120.84730 * 359.96101 * 18 17 16 20 20 C 1.36145 * 121.02672 * 0.02562 * 19 18 17 21 21 C 1.40536 * 119.76186 * 0.02562 * 20 19 18 22 22 N 1.31793 * 119.23834 * 359.97438 * 13 12 2 23 23 H 1.08996 * 109.47048 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46750 * 300.00270 * 1 2 3 25 25 H 1.08995 * 109.47165 * 60.00129 * 1 2 3 26 26 H 0.97003 * 120.00022 * 180.02562 * 7 6 4 27 27 H 1.08001 * 120.06033 * 0.02562 * 14 13 12 28 28 H 1.08007 * 120.84782 * 179.97438 * 15 14 13 29 29 H 1.08001 * 120.17405 * 359.95129 * 17 16 15 30 30 H 1.08004 * 119.57611 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.48250 * 180.29499 * 19 18 17 32 32 H 1.08000 * 120.11741 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1464 -2.2870 3.6039 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5866 4.8161 12 16 2.1334 -0.8533 -1.4778 13 6 1.5440 0.2422 -2.7257 14 6 1.8009 -0.0524 -4.0733 15 6 1.3519 0.7855 -5.0482 16 6 0.6344 1.9368 -4.6623 17 6 0.1430 2.8418 -5.6156 18 6 -0.5454 3.9438 -5.2064 19 6 -0.7692 4.1843 -3.8529 20 6 -0.3066 3.3268 -2.9020 21 6 0.4088 2.1796 -3.2856 22 7 0.8711 1.3187 -2.3718 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7096 1.1619 3.4844 27 1 2.3537 -0.9420 -4.3367 28 1 1.5410 0.5743 -6.0904 29 1 0.3107 2.6662 -6.6679 30 1 -0.9228 4.6398 -5.9410 31 1 -1.3219 5.0624 -3.5534 32 1 -0.4882 3.5279 -1.8565 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380529205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:33 Heat of formation + Delta-G solvation = 30.501394 kcal Electronic energy + Delta-G solvation = -16205.758977 eV Core-core repulsion = 13642.376722 eV Total energy + Delta-G solvation = -2563.382255 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.59430 -37.93563 -36.09962 -34.45144 -32.38474 -31.44825 -30.82620 -27.38594 -25.40292 -24.57489 -23.25511 -22.95630 -19.63366 -18.46672 -18.28595 -17.92472 -16.97861 -16.07602 -15.61398 -15.55976 -15.26922 -15.10509 -14.81147 -14.23502 -13.95473 -13.73313 -13.28344 -12.94451 -12.84398 -12.68566 -12.46772 -12.39147 -12.22112 -11.97838 -11.54113 -11.29590 -10.94736 -10.58348 -10.26449 -10.16477 -9.29011 -8.39170 -8.21810 -6.41728 -0.52204 -0.14779 0.84348 1.08944 1.39802 1.40295 1.53048 1.68519 1.94737 2.38031 3.05765 3.14902 3.51411 3.74720 3.93296 3.98815 4.16250 4.31494 4.42197 4.54615 4.69481 4.88559 4.93233 4.97238 5.05661 5.11350 5.15810 5.36640 5.45758 5.52816 5.57833 5.60987 5.82344 5.98789 6.02768 6.62628 6.89387 7.26065 8.83245 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.033099 B = 0.005496 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.748434 B = 5093.502579 C = 5822.773839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.972 3.028 9 H -0.265 1.265 10 H -0.275 1.275 11 H -0.274 1.274 12 S -0.117 6.117 13 C 0.136 3.864 14 C -0.167 4.167 15 C -0.032 4.032 16 C -0.133 4.133 17 C -0.083 4.083 18 C -0.125 4.125 19 C -0.086 4.086 20 C -0.134 4.134 21 C 0.110 3.890 22 N -0.512 5.512 23 H 0.024 0.976 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.267 0.733 27 H 0.160 0.840 28 H 0.190 0.810 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 4.408 -18.076 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.024 4.024 3 H 0.035 0.965 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.796 3.204 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.199 1.199 12 S 0.126 5.874 13 C -0.126 4.126 14 C -0.191 4.191 15 C -0.059 4.059 16 C -0.137 4.137 17 C -0.101 4.101 18 C -0.143 4.143 19 C -0.106 4.106 20 C -0.154 4.154 21 C -0.015 4.015 22 N -0.226 5.226 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.177 0.823 28 H 0.207 0.793 29 H 0.186 0.814 30 H 0.183 0.817 31 H 0.172 0.828 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.880 3.651 -17.051 17.538 hybrid contribution -0.288 0.618 0.856 1.094 sum -2.168 4.269 -16.195 16.888 Atomic orbital electron populations 1.21788 0.96081 0.98829 1.01126 1.20549 0.96111 0.95672 0.90110 0.96476 1.21062 1.33050 1.13339 0.90403 0.92073 1.25786 0.94643 0.95551 1.01862 1.70051 1.36560 1.23660 1.24615 0.85295 0.78333 0.78583 0.78205 1.18897 1.20074 1.19922 1.85201 1.68899 1.32707 1.00577 1.23700 0.96330 0.95667 0.96907 1.21729 1.03803 1.03113 0.90498 1.21836 0.92047 0.90701 1.01334 1.19163 1.02399 0.98595 0.93578 1.21388 0.95964 0.92945 0.99838 1.21333 0.98861 0.98311 0.95821 1.21249 0.97423 0.98734 0.93146 1.20910 0.99735 0.94040 1.00666 1.19401 0.97277 0.94737 0.90051 1.68559 1.12635 1.04036 1.37419 0.95664 0.91775 0.93772 0.92364 0.82255 0.79277 0.81371 0.81665 0.82848 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.45 8.74 71.98 0.63 -5.82 16 2 C 0.10 5.78 2.13 29.85 0.06 5.84 16 3 H 0.02 1.07 7.95 -2.40 -0.02 1.05 16 4 C -0.54 -31.29 8.58 25.60 0.22 -31.07 16 5 H 0.06 3.50 7.71 -2.91 -0.02 3.47 16 6 C 0.02 1.31 5.30 84.66 0.45 1.76 16 7 N -0.91 -53.96 11.32 21.45 0.24 -53.72 16 8 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 9 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 S -0.12 -5.42 21.41 -56.49 -1.21 -6.63 16 13 C 0.14 5.65 6.78 85.20 0.58 6.23 16 14 C -0.17 -5.13 9.74 22.29 0.22 -4.91 16 15 C -0.03 -0.78 9.88 22.48 0.22 -0.56 16 16 C -0.13 -3.71 5.74 -21.25 -0.12 -3.83 16 17 C -0.08 -1.57 9.77 22.31 0.22 -1.35 16 18 C -0.12 -2.18 9.96 22.05 0.22 -1.96 16 19 C -0.09 -1.95 9.94 22.03 0.22 -1.73 16 20 C -0.13 -4.39 9.98 22.34 0.22 -4.17 16 21 C 0.11 4.07 6.60 40.24 0.27 4.33 16 22 N -0.51 -22.76 6.76 -184.92 -1.25 -24.01 16 23 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 3.77 6.07 -2.39 -0.01 3.75 16 25 H 0.04 2.29 5.64 -2.39 -0.01 2.28 16 26 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 28 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -71.46 285.66 4.33 -67.13 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 1.12 Total: 8.15 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 3.40 Total: -37.23 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.01 Total: -77.73 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -1.21 Total: -6.63 kcal Total: -71.46 4.33 -67.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380529205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.632 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds