Wall clock time and date at job start Mon Mar 30 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47427 * 2 1 4 4 C 1.50707 * 109.46734 * 239.99884 * 2 1 3 5 5 H 1.07994 * 119.99967 * 239.99686 * 4 2 1 6 6 C 1.37877 * 119.99889 * 60.00325 * 4 2 1 7 7 N 1.31517 * 120.00173 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99721 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46869 * 60.00484 * 8 6 4 10 10 H 1.48498 * 109.46802 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47311 * 300.00010 * 8 6 4 12 12 S 1.80993 * 109.47022 * 120.00308 * 2 1 3 13 13 C 1.76202 * 100.00085 * 294.99653 * 12 2 1 14 14 C 1.40302 * 119.24103 * 180.02562 * 13 12 2 15 15 C 1.36171 * 119.87926 * 180.02562 * 14 13 12 16 16 C 1.41038 * 118.30115 * 359.97438 * 15 14 13 17 17 C 1.40326 * 121.24881 * 179.97438 * 16 15 14 18 18 C 1.36219 * 119.64698 * 179.97438 * 17 16 15 19 19 C 1.39279 * 120.84732 * 0.04254 * 18 17 16 20 20 C 1.36145 * 121.02672 * 359.97438 * 19 18 17 21 21 C 1.40536 * 119.76186 * 0.02562 * 20 19 18 22 22 N 1.31794 * 119.23506 * 0.02562 * 13 12 2 23 23 H 1.09002 * 109.47196 * 300.00071 * 1 2 3 24 24 H 1.09008 * 109.47376 * 60.00011 * 1 2 3 25 25 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99518 * 179.97438 * 7 6 4 27 27 H 1.08009 * 120.06108 * 0.02562 * 14 13 12 28 28 H 1.08002 * 120.84739 * 179.97438 * 15 14 13 29 29 H 1.08001 * 120.17367 * 0.02562 * 17 16 15 30 30 H 1.08003 * 119.57595 * 180.02562 * 18 17 16 31 31 H 1.08000 * 119.48250 * 180.25580 * 19 18 17 32 32 H 1.08000 * 120.11736 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 1.8276 -2.5198 -4.0082 10 1 1.8267 -0.4200 -5.2204 11 1 3.8073 -1.1192 -4.0078 12 16 2.1332 -0.8533 1.4778 13 6 1.5439 0.2422 2.7257 14 6 1.8017 -0.0517 4.0731 15 6 1.3519 0.7856 5.0482 16 6 0.6326 1.9359 4.6624 17 6 0.1403 2.8403 5.6157 18 6 -0.5498 3.9412 5.2066 19 6 -0.7745 4.1812 3.8532 20 6 -0.3111 3.3241 2.9022 21 6 0.4052 2.1775 3.2858 22 7 0.8711 1.3188 2.3717 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7087 1.1612 -3.4844 27 1 2.3560 -0.9405 4.3366 28 1 1.5411 0.5744 6.0903 29 1 0.3083 2.6649 6.6680 30 1 -0.9279 4.6368 5.9413 31 1 -1.3208 5.0632 3.5532 32 1 -0.4941 3.5243 1.8568 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380529206.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:36 Heat of formation + Delta-G solvation = 46.780426 kcal Electronic energy + Delta-G solvation = -16205.131079 eV Core-core repulsion = 13642.454736 eV Total energy + Delta-G solvation = -2562.676343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.39282 -36.77855 -34.05177 -33.19603 -30.44984 -30.21833 -29.59316 -25.25868 -24.17591 -23.35051 -21.84856 -21.20550 -18.32106 -17.10443 -16.98915 -16.09999 -15.20044 -14.54884 -14.46055 -14.20703 -14.03878 -13.57943 -13.17998 -12.90016 -12.52107 -11.97103 -11.70194 -11.48942 -11.42602 -10.97471 -10.89638 -10.69555 -10.46216 -10.28333 -10.09139 -9.40685 -9.00064 -8.89667 -8.82330 -8.41746 -8.15956 -6.76009 -6.11349 -4.22189 0.62344 1.03993 2.23469 2.40076 3.08164 3.28132 3.31971 3.34360 3.56310 4.34977 4.36321 4.66565 4.82029 4.99981 5.05389 5.18905 5.21592 5.33076 5.45991 5.56316 5.98232 6.06706 6.18930 6.21916 6.51747 6.57490 6.70515 6.85154 7.00350 7.02935 7.18265 7.52686 7.73603 7.94485 8.14424 8.21567 8.76306 9.41328 10.93555 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.033102 B = 0.005496 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.670800 B = 5093.446489 C = 5822.793918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.104 3.896 3 H 0.059 0.941 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.072 3.928 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 S -0.110 6.110 13 C 0.160 3.840 14 C -0.153 4.153 15 C -0.056 4.056 16 C -0.123 4.123 17 C -0.092 4.092 18 C -0.133 4.133 19 C -0.105 4.105 20 C -0.093 4.093 21 C 0.147 3.853 22 N -0.468 5.468 23 H 0.037 0.963 24 H 0.089 0.911 25 H 0.027 0.973 26 H 0.265 0.735 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 3.819 14.680 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.024 4.024 3 H 0.077 0.923 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.132 4.132 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.200 1.200 12 S 0.135 5.865 13 C -0.102 4.102 14 C -0.178 4.178 15 C -0.083 4.083 16 C -0.128 4.128 17 C -0.111 4.111 18 C -0.152 4.152 19 C -0.125 4.125 20 C -0.112 4.112 21 C 0.021 3.979 22 N -0.182 5.182 23 H 0.056 0.944 24 H 0.108 0.892 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.627 3.050 13.630 14.062 hybrid contribution -0.243 0.543 -0.041 0.596 sum -1.870 3.592 13.589 14.180 Atomic orbital electron populations 1.22007 0.96012 0.99542 1.02114 1.20943 0.96198 0.97466 0.87798 0.92281 1.20679 1.32784 1.13195 0.89145 0.91865 1.24875 0.94686 0.94921 0.98721 1.69897 1.35644 1.22405 1.23959 0.86468 0.79292 0.79694 0.81501 1.20003 1.21049 1.19993 1.85633 1.67447 1.31799 1.01663 1.23769 0.94692 0.95572 0.96176 1.21546 1.02635 1.01416 0.92164 1.21264 0.94918 0.92686 0.99471 1.18770 1.02297 0.97267 0.94422 1.20875 0.97656 0.94148 0.98408 1.20785 1.00429 0.98060 0.95965 1.20828 0.99581 0.99301 0.92821 1.20874 0.97069 0.92674 1.00629 1.19007 0.95952 0.94364 0.88539 1.68783 1.11474 1.02953 1.34993 0.94384 0.89208 0.95411 0.92519 0.84521 0.84620 0.85881 0.86130 0.85739 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.73 37.16 0.32 -3.15 16 2 C 0.10 2.69 2.13 -27.88 -0.06 2.63 16 3 H 0.06 1.69 7.95 -51.92 -0.41 1.28 16 4 C -0.52 -14.32 8.58 -34.44 -0.30 -14.62 16 5 H 0.06 1.73 7.71 -52.49 -0.40 1.32 16 6 C 0.07 1.98 5.30 -17.82 -0.09 1.89 16 7 N -0.88 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 S -0.11 -2.42 21.41 -107.50 -2.30 -4.72 16 13 C 0.16 3.21 6.78 -16.79 -0.11 3.10 16 14 C -0.15 -2.45 9.74 -39.55 -0.39 -2.83 16 15 C -0.06 -0.78 9.88 -39.26 -0.39 -1.17 16 16 C -0.12 -1.88 5.74 -106.77 -0.61 -2.49 16 17 C -0.09 -1.12 9.77 -39.52 -0.39 -1.50 16 18 C -0.13 -1.51 9.96 -39.92 -0.40 -1.91 16 19 C -0.11 -1.33 9.94 -39.95 -0.40 -1.72 16 20 C -0.09 -1.48 9.98 -39.47 -0.39 -1.88 16 21 C 0.15 2.67 6.60 -84.86 -0.56 2.11 16 22 N -0.47 -9.84 6.76 -9.80 -0.07 -9.90 16 23 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 24 H 0.09 2.46 6.07 -51.92 -0.32 2.14 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 28 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 285.66 15.07 4.30 4.30 Total: -1.00 -29.85 285.66 -9.74 -39.59 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -3.52 Total: 0.52 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -3.76 Total: -21.54 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.56 Total: -34.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.30 Total: -4.72 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.85 -9.74 -39.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380529206.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.367 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds