Wall clock time and date at job start Mon Mar 30 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47427 * 2 1 4 4 C 1.50707 * 109.46734 * 239.99884 * 2 1 3 5 5 H 1.07994 * 119.99967 * 239.99686 * 4 2 1 6 6 C 1.37877 * 119.99889 * 60.00325 * 4 2 1 7 7 N 1.31517 * 120.00173 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99721 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46869 * 60.00484 * 8 6 4 10 10 H 1.48498 * 109.46802 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47311 * 300.00010 * 8 6 4 12 12 S 1.80993 * 109.47022 * 120.00308 * 2 1 3 13 13 C 1.76202 * 100.00085 * 294.99653 * 12 2 1 14 14 C 1.40302 * 119.24103 * 180.02562 * 13 12 2 15 15 C 1.36171 * 119.87926 * 180.02562 * 14 13 12 16 16 C 1.41038 * 118.30115 * 359.97438 * 15 14 13 17 17 C 1.40326 * 121.24881 * 179.97438 * 16 15 14 18 18 C 1.36219 * 119.64698 * 179.97438 * 17 16 15 19 19 C 1.39279 * 120.84732 * 0.04254 * 18 17 16 20 20 C 1.36145 * 121.02672 * 359.97438 * 19 18 17 21 21 C 1.40536 * 119.76186 * 0.02562 * 20 19 18 22 22 N 1.31794 * 119.23506 * 0.02562 * 13 12 2 23 23 H 1.09002 * 109.47196 * 300.00071 * 1 2 3 24 24 H 1.09008 * 109.47376 * 60.00011 * 1 2 3 25 25 H 1.08998 * 109.47427 * 179.97438 * 1 2 3 26 26 H 0.96996 * 119.99518 * 179.97438 * 7 6 4 27 27 H 1.08009 * 120.06108 * 0.02562 * 14 13 12 28 28 H 1.08002 * 120.84739 * 179.97438 * 15 14 13 29 29 H 1.08001 * 120.17367 * 0.02562 * 17 16 15 30 30 H 1.08003 * 119.57595 * 180.02562 * 18 17 16 31 31 H 1.08000 * 119.48250 * 180.25580 * 19 18 17 32 32 H 1.08000 * 120.11736 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 1.8276 -2.5198 -4.0082 10 1 1.8267 -0.4200 -5.2204 11 1 3.8073 -1.1192 -4.0078 12 16 2.1332 -0.8533 1.4778 13 6 1.5439 0.2422 2.7257 14 6 1.8017 -0.0517 4.0731 15 6 1.3519 0.7856 5.0482 16 6 0.6326 1.9359 4.6624 17 6 0.1403 2.8403 5.6157 18 6 -0.5498 3.9412 5.2066 19 6 -0.7745 4.1812 3.8532 20 6 -0.3111 3.3241 2.9022 21 6 0.4052 2.1775 3.2858 22 7 0.8711 1.3188 2.3717 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7087 1.1612 -3.4844 27 1 2.3560 -0.9405 4.3366 28 1 1.5411 0.5744 6.0903 29 1 0.3083 2.6649 6.6680 30 1 -0.9279 4.6368 5.9413 31 1 -1.3208 5.0632 3.5532 32 1 -0.4941 3.5243 1.8568 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380529206.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:36 Heat of formation + Delta-G solvation = 30.649072 kcal Electronic energy + Delta-G solvation = -16205.830587 eV Core-core repulsion = 13642.454736 eV Total energy + Delta-G solvation = -2563.375851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.59459 -37.93581 -36.09632 -34.45135 -32.38189 -31.44837 -30.82602 -27.38101 -25.40321 -24.57475 -23.25232 -22.95623 -19.63270 -18.46375 -18.28417 -17.92013 -16.97797 -16.08067 -15.61269 -15.55904 -15.27016 -15.10191 -14.80865 -14.22835 -13.95299 -13.73348 -13.27797 -12.93241 -12.82344 -12.70851 -12.46597 -12.38943 -12.23429 -11.97075 -11.54729 -11.30795 -10.94620 -10.57416 -10.26419 -10.16400 -9.28997 -8.39094 -8.21189 -6.41359 -0.52208 -0.14769 0.84365 1.08945 1.40325 1.43094 1.50622 1.68307 1.94749 2.38418 3.06216 3.14912 3.51409 3.74722 3.93322 3.98817 4.16260 4.31491 4.42196 4.54604 4.69572 4.88569 4.93370 4.97250 5.05703 5.11349 5.15814 5.36524 5.45761 5.52820 5.57863 5.60995 5.82374 5.98800 6.02968 6.62480 6.89395 7.26312 8.83423 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.033102 B = 0.005496 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.670800 B = 5093.446489 C = 5822.793918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.541 4.541 5 H 0.061 0.939 6 C 0.024 3.976 7 N -0.911 5.911 8 Si 0.972 3.028 9 H -0.267 1.267 10 H -0.278 1.278 11 H -0.268 1.268 12 S -0.117 6.117 13 C 0.136 3.864 14 C -0.167 4.167 15 C -0.032 4.032 16 C -0.133 4.133 17 C -0.083 4.083 18 C -0.125 4.125 19 C -0.086 4.086 20 C -0.134 4.134 21 C 0.110 3.890 22 N -0.512 5.512 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.024 0.976 26 H 0.267 0.733 27 H 0.160 0.840 28 H 0.190 0.810 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 4.409 18.060 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.024 4.024 3 H 0.035 0.965 4 C -0.580 4.580 5 H 0.079 0.921 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.193 1.193 12 S 0.126 5.874 13 C -0.126 4.126 14 C -0.191 4.191 15 C -0.059 4.059 16 C -0.137 4.137 17 C -0.101 4.101 18 C -0.143 4.143 19 C -0.106 4.106 20 C -0.154 4.154 21 C -0.015 4.015 22 N -0.226 5.226 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.177 0.823 28 H 0.207 0.793 29 H 0.186 0.814 30 H 0.183 0.817 31 H 0.172 0.828 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.878 3.660 17.030 17.520 hybrid contribution -0.278 0.601 -0.846 1.074 sum -2.156 4.261 16.184 16.874 Atomic orbital electron populations 1.21790 0.96093 0.98812 1.01126 1.20538 0.96101 0.95659 0.90095 0.96491 1.21000 1.33203 1.13416 0.90416 0.92066 1.25785 0.94629 0.95543 1.01845 1.70039 1.36433 1.23642 1.24731 0.85409 0.78892 0.78684 0.77511 1.19180 1.20272 1.19296 1.85193 1.68926 1.32685 1.00577 1.23697 0.96354 0.95647 0.96906 1.21729 1.03798 1.03121 0.90501 1.21835 0.92051 0.90700 1.01331 1.19163 1.02381 0.98611 0.93582 1.21388 0.95965 0.92946 0.99836 1.21333 0.98840 0.98327 0.95825 1.21249 0.97418 0.98740 0.93144 1.20910 0.99715 0.94061 1.00664 1.19401 0.97262 0.94754 0.90049 1.68559 1.12614 1.04062 1.37415 0.93781 0.91762 0.95689 0.92355 0.82253 0.79277 0.81372 0.81665 0.82847 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.45 8.73 71.98 0.63 -5.82 16 2 C 0.10 5.81 2.13 29.85 0.06 5.87 16 3 H 0.02 1.06 7.95 -2.40 -0.02 1.04 16 4 C -0.54 -31.38 8.58 25.60 0.22 -31.16 16 5 H 0.06 3.48 7.71 -2.91 -0.02 3.46 16 6 C 0.02 1.34 5.30 84.65 0.45 1.79 16 7 N -0.91 -53.96 11.32 21.45 0.24 -53.72 16 8 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 S -0.12 -5.42 21.41 -56.49 -1.21 -6.63 16 13 C 0.14 5.65 6.78 85.20 0.58 6.23 16 14 C -0.17 -5.13 9.74 22.29 0.22 -4.91 16 15 C -0.03 -0.78 9.88 22.48 0.22 -0.56 16 16 C -0.13 -3.71 5.74 -21.25 -0.12 -3.83 16 17 C -0.08 -1.57 9.77 22.31 0.22 -1.35 16 18 C -0.12 -2.18 9.96 22.05 0.22 -1.96 16 19 C -0.09 -1.95 9.94 22.03 0.22 -1.73 16 20 C -0.13 -4.39 9.98 22.34 0.22 -4.17 16 21 C 0.11 4.07 6.60 40.24 0.27 4.33 16 22 N -0.51 -22.77 6.76 -184.93 -1.25 -24.02 16 23 H 0.04 2.29 5.64 -2.39 -0.01 2.28 16 24 H 0.06 3.77 6.07 -2.38 -0.01 3.76 16 25 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 27 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 28 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 30 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -71.37 285.66 4.33 -67.04 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.12 Total: 8.36 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 3.40 Total: -37.27 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -1.01 Total: -77.74 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -1.21 Total: -6.63 kcal Total: -71.37 4.33 -67.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380529206.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.685 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds