Wall clock time and date at job start Mon Mar 30 2020 06:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35774 * 117.00524 * 2 1 4 4 N 1.32146 * 119.68467 * 359.97438 * 3 2 1 5 5 C 1.32237 * 122.33492 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.28638 * 179.97438 * 5 4 3 7 7 F 1.39894 * 109.47433 * 30.00263 * 6 5 4 8 8 F 1.39903 * 109.47158 * 150.00717 * 6 5 4 9 9 C 1.36373 * 121.42685 * 0.28481 * 5 4 3 10 10 C 1.41212 * 119.17429 * 359.43056 * 9 5 4 11 11 C 1.41246 * 121.03996 * 180.28583 * 10 9 5 12 12 H 1.07993 * 119.99874 * 204.14485 * 11 10 9 13 13 C 1.40028 * 119.99863 * 24.14641 * 11 10 9 14 14 N 1.30777 * 120.00104 * 14.24537 * 13 11 10 15 15 Si 1.86798 * 119.99835 * 194.25478 * 13 11 10 16 16 H 1.48496 * 109.47468 * 89.99790 * 15 13 11 17 17 H 1.48500 * 109.46935 * 210.00034 * 15 13 11 18 18 H 1.48501 * 109.47038 * 329.99528 * 15 13 11 19 19 C 1.39327 * 119.69424 * 179.97438 * 3 2 1 20 20 O 1.35705 * 120.73429 * 0.02562 * 19 3 2 21 21 C 1.42908 * 116.99800 * 90.00113 * 20 19 3 22 22 H 1.09001 * 109.47055 * 300.00593 * 1 2 3 23 23 H 1.09001 * 109.47090 * 60.00061 * 1 2 3 24 24 H 1.08999 * 109.47354 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47592 * 270.00078 * 6 5 4 26 26 H 1.08004 * 120.41025 * 179.69952 * 9 5 4 27 27 H 0.96998 * 119.99632 * 179.97438 * 14 13 11 28 28 H 1.08993 * 109.47017 * 299.99663 * 21 20 19 29 29 H 1.08999 * 109.46732 * 59.99632 * 21 20 19 30 30 H 1.09002 * 109.47128 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 7 1.3198 2.3141 -0.0005 5 6 1.8651 3.5187 0.0000 6 6 0.9717 4.7323 -0.0013 7 9 -0.2254 4.4309 0.6569 8 9 1.6145 5.7852 0.6587 9 6 3.2185 3.6866 -0.0048 10 6 4.0534 2.5478 0.0020 11 6 5.4600 2.6760 0.0034 12 1 6.0758 1.8733 -0.3743 13 6 6.0561 3.8440 0.4948 14 7 5.3519 4.6906 1.2001 15 14 7.8571 4.1928 0.1425 16 1 7.9742 4.9619 -1.1224 17 1 8.4355 4.9840 1.2582 18 1 8.5934 2.9099 0.0117 19 6 3.4372 1.2751 0.0005 20 8 4.1847 0.1424 0.0005 21 6 4.5426 -0.3987 -1.2728 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.7575 5.0248 -1.0292 26 1 3.6463 4.6783 -0.0092 27 1 5.7649 5.4995 1.5408 28 1 3.6387 -0.6444 -1.8301 29 1 5.1242 0.3362 -1.8293 30 1 5.1381 -1.3004 -1.1300 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381261504.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:36 Heat of formation + Delta-G solvation = -170.173794 kcal Electronic energy + Delta-G solvation = -19793.006035 eV Core-core repulsion = 16223.939450 eV Total energy + Delta-G solvation = -3569.066585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.86025 -47.88103 -41.23795 -38.85698 -38.29188 -36.02716 -32.48768 -31.70104 -28.93581 -27.98447 -27.56466 -26.02822 -23.51827 -22.63271 -19.98782 -18.79938 -18.38876 -18.23291 -17.91260 -17.50811 -17.30216 -16.87782 -16.30181 -15.83635 -15.43639 -14.85310 -14.66250 -14.50015 -14.26706 -14.15063 -13.82846 -13.56406 -13.37665 -13.00299 -12.80630 -12.60644 -12.38120 -12.13484 -11.94466 -11.85906 -11.37994 -10.97209 -10.08825 -10.05912 -9.11265 -8.79786 -6.70213 0.37386 0.80992 1.38898 1.51355 1.54298 2.13630 2.36254 2.50935 2.80879 3.05999 3.24641 3.50852 3.74009 4.09654 4.43157 4.49121 4.50662 4.53943 4.64072 4.71695 4.78483 4.81435 4.94061 5.10725 5.23436 5.38036 5.71563 6.17095 6.39927 6.46304 6.63716 7.04181 7.28400 8.10244 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.016405 B = 0.009936 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.423075 B = 2817.375537 C = 4388.841567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.323 6.323 3 C 0.309 3.691 4 N -0.598 5.598 5 C 0.052 3.948 6 C 0.335 3.665 7 F -0.204 7.204 8 F -0.203 7.203 9 C -0.203 4.203 10 C 0.103 3.897 11 C -0.441 4.441 12 H 0.089 0.911 13 C 0.036 3.964 14 N -0.794 5.794 15 Si 0.994 3.006 16 H -0.254 1.254 17 H -0.264 1.264 18 H -0.257 1.257 19 C -0.110 4.110 20 O -0.328 6.328 21 C 0.031 3.969 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.122 0.878 25 H 0.159 0.841 26 H 0.139 0.861 27 H 0.300 0.700 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 -0.601 -4.896 5.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.231 6.231 3 C 0.130 3.870 4 N -0.330 5.330 5 C -0.076 4.076 6 C 0.281 3.719 7 F -0.186 7.186 8 F -0.184 7.184 9 C -0.227 4.227 10 C 0.095 3.905 11 C -0.470 4.470 12 H 0.107 0.893 13 C -0.184 4.184 14 N -0.418 5.418 15 Si 0.813 3.187 16 H -0.178 1.178 17 H -0.188 1.188 18 H -0.180 1.180 19 C -0.159 4.159 20 O -0.244 6.244 21 C -0.064 4.064 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.140 0.860 25 H 0.176 0.824 26 H 0.156 0.844 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.768 -0.788 -4.563 5.395 hybrid contribution 1.062 0.428 0.013 1.145 sum -1.707 -0.360 -4.550 4.873 Atomic orbital electron populations 1.22893 0.77057 1.03782 1.01533 1.86239 1.23504 1.24717 1.88683 1.20035 0.88439 0.84685 0.93834 1.66543 1.39552 0.97338 1.29561 1.20773 0.92748 0.92163 1.01960 1.20275 0.76206 0.81530 0.93937 1.92930 1.47526 1.93777 1.84323 1.92978 1.82503 1.58566 1.84396 1.21638 0.91802 1.00601 1.08683 1.18226 0.95106 0.89393 0.87778 1.19808 0.91028 1.02018 1.34173 0.89299 1.27015 1.06172 0.93826 0.91404 1.69792 1.40883 1.09632 1.21484 0.85003 0.74527 0.79643 0.79503 1.17766 1.18842 1.18038 1.18929 0.86297 0.86919 1.23750 1.85952 1.70353 1.38909 1.29154 1.23034 0.99062 0.98559 0.85730 0.93807 0.92959 0.86006 0.82384 0.84383 0.88862 0.94752 0.94693 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 10.38 113.37 1.18 2.58 16 2 O -0.32 -14.16 10.28 -77.41 -0.80 -14.95 16 3 C 0.31 15.27 7.51 84.91 0.64 15.91 16 4 N -0.60 -28.66 8.77 -297.73 -2.61 -31.27 16 5 C 0.05 2.44 6.54 42.06 0.27 2.71 16 6 C 0.33 12.66 5.71 71.23 0.41 13.07 16 7 F -0.20 -8.01 17.04 44.97 0.77 -7.24 16 8 F -0.20 -8.13 16.42 44.97 0.74 -7.39 16 9 C -0.20 -10.29 8.04 22.57 0.18 -10.11 16 10 C 0.10 5.47 5.62 -21.03 -0.12 5.35 16 11 C -0.44 -22.41 8.82 23.44 0.21 -22.20 16 12 H 0.09 4.38 7.33 -2.91 -0.02 4.36 16 13 C 0.04 1.65 5.25 85.28 0.45 2.10 16 14 N -0.79 -38.39 10.79 21.84 0.24 -38.16 16 15 Si 0.99 34.64 29.58 68.60 2.03 36.67 16 16 H -0.25 -8.37 7.11 99.48 0.71 -7.67 16 17 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 18 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 19 C -0.11 -5.71 5.82 23.31 0.14 -5.58 16 20 O -0.33 -16.01 9.63 -76.65 -0.74 -16.75 16 21 C 0.03 1.17 11.06 113.37 1.25 2.42 16 22 H 0.04 1.51 8.11 -2.39 -0.02 1.49 16 23 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 24 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 25 H 0.16 4.50 8.14 -2.39 -0.02 4.48 16 26 H 0.14 7.02 5.60 -2.91 -0.02 7.01 16 27 H 0.30 12.91 8.29 -92.71 -0.77 12.14 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 30 H 0.11 3.26 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -62.24 276.41 5.41 -56.83 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.18 Total: 16.02 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 4.60 Total: 6.25 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -2.37 Total: -69.43 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.53 Total: -31.70 kcal Atomic # 9 Polarization: -16.14 SS G_CDS: 1.50 Total: -14.64 kcal Atomic # 14 Polarization: 34.64 SS G_CDS: 2.03 Total: 36.67 kcal Total: -62.24 5.41 -56.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381261504.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.342 kcal (2) G-P(sol) polarization free energy of solvation -62.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds