Wall clock time and date at job start Mon Mar 30 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36025 * 117.00368 * 2 1 4 4 C 1.38589 * 120.36679 * 359.72330 * 3 2 1 5 5 N 1.32227 * 121.33809 * 179.72576 * 4 3 2 6 6 C 1.31435 * 122.20241 * 0.59140 * 5 4 3 7 7 C 1.50692 * 119.72703 * 179.70361 * 6 5 4 8 8 F 1.39899 * 109.47242 * 21.39232 * 7 6 5 9 9 F 1.39901 * 109.47417 * 141.39358 * 7 6 5 10 10 C 1.40710 * 120.54832 * 359.67579 * 6 5 4 11 11 C 1.41241 * 120.68760 * 180.02562 * 10 6 5 12 12 H 1.07996 * 120.00072 * 321.66770 * 11 10 6 13 13 C 1.39924 * 119.99479 * 141.65895 * 11 10 6 14 14 N 1.30871 * 120.00448 * 340.11783 * 13 11 10 15 15 Si 1.86804 * 119.99525 * 160.11673 * 13 11 10 16 16 H 1.48503 * 109.47091 * 90.00107 * 15 13 11 17 17 H 1.48498 * 109.47177 * 210.00016 * 15 13 11 18 18 H 1.48494 * 109.47173 * 330.00191 * 15 13 11 19 19 C 1.39280 * 120.37369 * 180.02562 * 3 2 1 20 20 O 1.35625 * 120.98847 * 359.97438 * 19 3 2 21 21 C 1.42904 * 116.99864 * 90.00044 * 20 19 3 22 22 H 1.08996 * 109.46911 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46844 * 59.99866 * 1 2 3 24 24 H 1.09005 * 109.46469 * 300.00039 * 1 2 3 25 25 H 1.07998 * 119.32500 * 359.97438 * 4 3 2 26 26 H 1.09002 * 109.47482 * 261.39368 * 7 6 5 27 27 H 0.96997 * 119.99883 * 179.14015 * 14 13 11 28 28 H 1.08998 * 109.46964 * 300.00582 * 21 20 19 29 29 H 1.09004 * 109.46555 * 59.99819 * 21 20 19 30 30 H 1.08992 * 109.47231 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.2994 2.3791 -0.0058 5 7 1.8796 3.5672 -0.0005 6 6 3.1864 3.7085 -0.0010 7 6 3.7886 5.0899 -0.0016 8 9 2.8494 6.0083 0.4797 9 9 4.9201 5.1057 0.8210 10 6 4.0277 2.5807 -0.0005 11 6 5.4323 2.7291 -0.0005 12 1 5.8922 3.5152 -0.5809 13 6 6.2278 1.8577 0.7516 14 7 5.7007 1.1756 1.7364 15 14 8.0423 1.6680 0.3501 16 1 8.8277 2.6594 1.1283 17 1 8.4869 0.2962 0.7044 18 1 8.2547 1.8977 -1.1015 19 6 3.4370 1.2938 -0.0005 20 8 4.2024 0.1742 -0.0005 21 6 4.5681 -0.3617 -1.2739 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 0.5139 0.8901 25 1 0.2212 2.3168 -0.0107 26 1 4.0744 5.3613 -1.0178 27 1 6.2494 0.5623 2.2497 28 1 3.6679 -0.6222 -1.8305 29 1 5.1373 0.3824 -1.8312 30 1 5.1784 -1.2534 -1.1311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381556670.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:39 Heat of formation + Delta-G solvation = -158.946867 kcal Electronic energy + Delta-G solvation = -20223.749454 eV Core-core repulsion = 16655.169705 eV Total energy + Delta-G solvation = -3568.579749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.60742 -47.63259 -41.21861 -38.94317 -38.25443 -35.56681 -32.39767 -31.68893 -28.86922 -27.92999 -27.17334 -26.32184 -23.31908 -22.50373 -19.72242 -18.77450 -18.47621 -18.16543 -17.96254 -17.27449 -16.86096 -16.69219 -16.31746 -15.66682 -15.22164 -15.05161 -14.77899 -14.46222 -14.18013 -14.08198 -13.83843 -13.48484 -13.43479 -12.87451 -12.74806 -12.50182 -12.43803 -12.13721 -12.05096 -11.83353 -11.11662 -10.52356 -10.16814 -9.61239 -9.12090 -8.70776 -6.48050 0.52841 0.71694 1.41607 1.47741 1.54830 2.21008 2.46718 2.68890 3.06254 3.12720 3.43581 3.52435 3.95990 4.24837 4.32676 4.35354 4.42860 4.55725 4.57534 4.66498 4.71567 4.76412 4.89874 5.15082 5.25836 5.46959 5.57943 6.14156 6.37255 6.57034 6.72889 7.18695 7.39553 8.29504 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.012259 C = 0.007415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.970115 B = 2283.508360 C = 3775.126192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.085 3.915 4 C -0.102 4.102 5 N -0.423 5.423 6 C -0.111 4.111 7 C 0.351 3.649 8 F -0.212 7.212 9 F -0.201 7.201 10 C 0.080 3.920 11 C -0.453 4.453 12 H 0.096 0.904 13 C 0.054 3.946 14 N -0.773 5.773 15 Si 0.966 3.034 16 H -0.264 1.264 17 H -0.267 1.267 18 H -0.248 1.248 19 C 0.004 3.996 20 O -0.305 6.305 21 C 0.034 3.966 22 H 0.122 0.878 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.164 0.836 26 H 0.138 0.862 27 H 0.291 0.709 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 -1.988 -5.212 5.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.037 3.963 4 C -0.260 4.260 5 N -0.133 5.133 6 C -0.254 4.254 7 C 0.297 3.703 8 F -0.193 7.193 9 F -0.182 7.182 10 C 0.074 3.926 11 C -0.480 4.480 12 H 0.114 0.886 13 C -0.169 4.169 14 N -0.394 5.394 15 Si 0.786 3.214 16 H -0.189 1.189 17 H -0.192 1.192 18 H -0.172 1.172 19 C -0.049 4.049 20 O -0.221 6.221 21 C -0.061 4.061 22 H 0.140 0.860 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.181 0.819 26 H 0.155 0.845 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.080 -1.718 -4.805 5.510 hybrid contribution 0.752 -0.715 0.090 1.042 sum -1.328 -2.433 -4.715 5.470 Atomic orbital electron populations 1.23283 0.77082 1.05192 1.01903 1.86073 1.23061 1.26336 1.88817 1.20510 0.92249 0.85967 0.97542 1.22128 0.99616 0.85985 1.18294 1.66493 1.12089 1.27313 1.07369 1.21585 0.89833 0.95059 1.18969 1.19831 0.74465 0.83669 0.92358 1.92893 1.67109 1.68518 1.90818 1.92971 1.52167 1.96745 1.76362 1.18436 0.95304 0.89617 0.89201 1.19604 0.90136 1.13932 1.24298 0.88587 1.26547 1.05132 0.92564 0.92616 1.69794 1.40555 1.17053 1.11995 0.85435 0.76573 0.78714 0.80637 1.18921 1.19191 1.17165 1.18408 0.85529 0.87436 1.13495 1.86055 1.69001 1.39480 1.27528 1.22893 0.98934 0.98222 0.86041 0.86014 0.91783 0.92593 0.81853 0.84464 0.89818 0.94663 0.94547 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.82 113.37 1.11 1.66 16 2 O -0.33 -13.46 10.34 -81.36 -0.84 -14.30 16 3 C 0.09 3.99 6.71 22.60 0.15 4.14 16 4 C -0.10 -4.55 10.21 84.72 0.86 -3.69 16 5 N -0.42 -20.50 9.83 -181.71 -1.79 -22.28 16 6 C -0.11 -5.48 6.65 43.22 0.29 -5.19 16 7 C 0.35 15.02 5.26 71.23 0.37 15.39 16 8 F -0.21 -9.16 16.97 44.97 0.76 -8.40 16 9 F -0.20 -9.25 14.91 44.97 0.67 -8.57 16 10 C 0.08 4.15 5.35 -21.11 -0.11 4.03 16 11 C -0.45 -22.47 6.84 23.42 0.16 -22.31 16 12 H 0.10 4.47 7.22 -2.91 -0.02 4.45 16 13 C 0.05 2.57 4.48 85.24 0.38 2.95 16 14 N -0.77 -39.89 11.22 21.83 0.24 -39.64 16 15 Si 0.97 36.16 29.60 68.60 2.03 38.19 16 16 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 17 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 18 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 19 C 0.00 0.19 5.28 23.35 0.12 0.31 16 20 O -0.31 -15.07 7.28 -76.91 -0.56 -15.63 16 21 C 0.03 1.35 11.13 113.37 1.26 2.61 16 22 H 0.12 2.51 8.14 -2.39 -0.02 2.50 16 23 H 0.06 1.57 7.66 -2.39 -0.02 1.55 16 24 H 0.06 1.48 7.68 -2.38 -0.02 1.46 16 25 H 0.16 6.04 6.27 -2.91 -0.02 6.02 16 26 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 27 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -63.55 271.03 6.31 -57.24 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.18 Total: 13.51 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 4.61 Total: -0.11 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -1.54 Total: -61.93 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.40 Total: -29.94 kcal Atomic # 9 Polarization: -18.40 SS G_CDS: 1.43 Total: -16.97 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -63.55 6.31 -57.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381556670.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.703 kcal (2) G-P(sol) polarization free energy of solvation -63.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds