Wall clock time and date at job start Mon Mar 30 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35972 * 117.00135 * 2 1 4 4 C 1.39166 * 120.26366 * 359.72022 * 3 2 1 5 5 N 1.32005 * 121.33089 * 179.74751 * 4 3 2 6 6 C 1.32024 * 121.94462 * 0.53754 * 5 4 3 7 7 O 1.35448 * 119.81986 * 179.75172 * 6 5 4 8 8 C 1.42903 * 117.00179 * 359.97438 * 7 6 5 9 9 C 1.41479 * 120.35970 * 359.72929 * 6 5 4 10 10 C 1.41112 * 120.66825 * 179.97438 * 9 6 5 11 11 H 1.08001 * 120.00202 * 218.82814 * 10 9 6 12 12 C 1.39931 * 119.99825 * 38.82734 * 10 9 6 13 13 N 1.30867 * 120.00278 * 19.98495 * 12 10 9 14 14 Si 1.86808 * 120.00248 * 199.98853 * 12 10 9 15 15 H 1.48504 * 109.46741 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47031 * 119.99569 * 14 12 10 17 17 H 1.48494 * 109.46943 * 239.99957 * 14 12 10 18 18 C 1.38407 * 120.26480 * 179.97438 * 3 2 1 19 19 C 1.50696 * 120.88904 * 359.97438 * 18 3 2 20 20 F 1.39903 * 109.47090 * 119.99952 * 19 18 3 21 21 F 1.39895 * 109.47157 * 239.99390 * 19 18 3 22 22 H 1.08998 * 109.47866 * 300.00271 * 1 2 3 23 23 H 1.09006 * 109.47369 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46651 * 60.00453 * 1 2 3 25 25 H 1.07999 * 119.33226 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.46870 * 59.99989 * 8 7 6 27 27 H 1.08996 * 109.46964 * 180.02562 * 8 7 6 28 28 H 1.09002 * 109.47129 * 300.00775 * 8 7 6 29 29 H 0.96998 * 120.00261 * 180.02562 * 13 12 10 30 30 H 1.08995 * 109.47564 * 0.02562 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2937 2.3821 -0.0059 5 7 1.8710 3.5693 -0.0010 6 6 3.1840 3.7075 -0.0009 7 8 3.7308 4.9468 -0.0009 8 6 2.8277 6.0543 -0.0016 9 6 4.0230 2.5684 -0.0003 10 6 5.4271 2.7086 -0.0008 11 1 6.0368 2.0368 -0.5869 12 6 6.0296 3.7181 0.7582 13 7 5.3767 4.2701 1.7489 14 14 7.7662 4.2779 0.3572 15 1 8.2818 3.5018 -0.7991 16 1 7.7542 5.7236 0.0178 17 1 8.6430 4.0530 1.5343 18 6 3.4281 1.2903 0.0005 19 6 4.2741 0.0432 0.0017 20 9 5.0822 0.0268 -1.1403 21 9 5.0813 0.0283 1.1442 22 1 -0.3635 0.5138 0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 0.2157 2.3180 -0.0100 26 1 2.1995 6.0114 0.8881 27 1 3.3947 6.9853 -0.0020 28 1 2.2002 6.0110 -0.8918 29 1 5.7942 4.9701 2.2748 30 1 3.6277 -0.8344 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390281739.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:24 Heat of formation + Delta-G solvation = -143.686577 kcal Electronic energy + Delta-G solvation = -20199.528444 eV Core-core repulsion = 16631.610431 eV Total energy + Delta-G solvation = -3567.918013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.80774 -45.79048 -39.45500 -37.95136 -35.74213 -33.97411 -31.65691 -29.30297 -26.96380 -26.21599 -26.13070 -24.47417 -21.43471 -20.69154 -18.08611 -17.11593 -17.04550 -16.19065 -16.09999 -15.50282 -15.19363 -15.03240 -14.51750 -14.48778 -13.88316 -13.27701 -12.78831 -12.58933 -12.48141 -12.20829 -12.15068 -11.69847 -11.54300 -11.37023 -11.17386 -10.94132 -10.79316 -10.76500 -10.35035 -10.07401 -9.71883 -9.23401 -8.37354 -8.16580 -6.98388 -6.78183 -4.54738 2.44560 2.62460 3.08357 3.11231 3.15876 3.87346 3.97796 4.45171 4.58916 4.95034 5.26364 5.38105 5.46994 5.54464 5.63734 5.80579 5.88492 6.11230 6.14379 6.19080 6.25601 6.33084 6.56895 6.92706 7.13872 7.16007 7.34125 8.06016 8.12232 8.26352 8.63353 8.84434 9.34933 10.05486 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.010570 C = 0.007443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.718812 B = 2648.339768 C = 3761.050678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.110 3.890 4 C -0.096 4.096 5 N -0.500 5.500 6 C 0.253 3.747 7 O -0.275 6.275 8 C 0.047 3.953 9 C 0.124 3.876 10 C -0.428 4.428 11 H 0.096 0.904 12 C 0.087 3.913 13 N -0.746 5.746 14 Si 0.912 3.088 15 H -0.257 1.257 16 H -0.269 1.269 17 H -0.273 1.273 18 C -0.280 4.280 19 C 0.347 3.653 20 F -0.213 7.213 21 F -0.204 7.204 22 H 0.050 0.950 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.130 0.870 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.286 0.714 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -2.281 -1.670 4.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.242 6.242 3 C 0.063 3.937 4 C -0.243 4.243 5 N -0.225 5.225 6 C 0.063 3.937 7 O -0.180 6.180 8 C -0.050 4.050 9 C 0.118 3.882 10 C -0.456 4.456 11 H 0.114 0.886 12 C -0.137 4.137 13 N -0.367 5.367 14 Si 0.736 3.264 15 H -0.180 1.180 16 H -0.194 1.194 17 H -0.199 1.199 18 C -0.287 4.287 19 C 0.293 3.707 20 F -0.194 7.194 21 F -0.185 7.185 22 H 0.068 0.932 23 H 0.107 0.893 24 H 0.068 0.932 25 H 0.148 0.852 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.123 -1.564 -1.460 4.645 hybrid contribution 0.636 -0.043 0.027 0.638 sum -3.487 -1.607 -1.433 4.098 Atomic orbital electron populations 1.22845 0.79647 1.02520 1.01079 1.85906 1.20463 1.28035 1.89812 1.19236 0.91391 0.84376 0.98647 1.21251 0.97608 0.86075 1.19411 1.66581 1.11760 1.27583 1.16591 1.20059 0.86824 0.85459 1.01314 1.86328 1.32398 1.10912 1.88362 1.22480 0.93883 0.88105 1.00527 1.17041 0.93925 0.87045 0.90208 1.19559 0.90950 1.12482 1.22649 0.88593 1.25817 1.00680 0.94072 0.93165 1.69737 1.38265 1.17785 1.10948 0.86176 0.81037 0.79380 0.79795 1.18040 1.19427 1.19879 1.19435 0.89673 0.94355 1.25247 1.19574 0.82858 0.97351 0.70902 1.92907 1.76613 1.97729 1.52176 1.92948 1.76358 1.97708 1.51495 0.93166 0.89318 0.93187 0.85248 0.93883 0.90816 0.94274 0.90365 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 16 2 O -0.33 -6.28 9.37 -19.65 -0.18 -6.47 16 3 C 0.11 2.50 6.67 -39.17 -0.26 2.24 16 4 C -0.10 -2.17 10.21 -17.13 -0.18 -2.34 16 5 N -0.50 -12.39 9.19 -12.48 -0.11 -12.50 16 6 C 0.25 6.67 7.01 -16.24 -0.11 6.55 16 7 O -0.27 -6.85 7.38 -18.03 -0.13 -6.98 16 8 C 0.05 0.94 10.38 101.05 1.05 1.99 16 9 C 0.12 3.34 5.36 -106.54 -0.57 2.77 16 10 C -0.43 -11.38 7.56 -37.86 -0.29 -11.67 16 11 H 0.10 2.54 6.58 -52.49 -0.35 2.19 16 12 C 0.09 2.17 4.43 -17.33 -0.08 2.09 16 13 N -0.75 -19.14 11.24 55.55 0.62 -18.51 16 14 Si 0.91 18.91 29.60 -169.99 -5.03 13.87 16 15 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 18 C -0.28 -6.94 5.45 -103.53 -0.56 -7.51 16 19 C 0.35 7.78 5.02 36.00 0.18 7.96 16 20 F -0.21 -4.84 15.86 2.25 0.04 -4.81 16 21 F -0.20 -4.86 16.67 2.25 0.04 -4.82 16 22 H 0.05 0.67 7.68 -51.93 -0.40 0.27 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 25 H 0.13 2.50 6.27 -52.49 -0.33 2.17 16 26 H 0.04 0.86 8.10 -51.93 -0.42 0.44 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.29 6.62 8.30 -40.82 -0.34 6.29 16 30 H 0.10 1.92 7.09 -51.93 -0.37 1.56 16 LS Contribution 268.62 15.07 4.05 4.05 Total: -1.00 -29.66 268.62 -3.21 -32.86 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -2.66 Total: -0.25 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 0.17 Total: 3.56 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.51 Total: -31.02 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.32 Total: -13.45 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.66 -3.21 -32.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390281739.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.823 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds