Wall clock time and date at job start Mon Mar 30 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35972 * 117.00135 * 2 1 4 4 C 1.39166 * 120.26366 * 359.72022 * 3 2 1 5 5 N 1.32005 * 121.33089 * 179.74751 * 4 3 2 6 6 C 1.32024 * 121.94462 * 0.53754 * 5 4 3 7 7 O 1.35448 * 119.81986 * 179.75172 * 6 5 4 8 8 C 1.42903 * 117.00179 * 359.97438 * 7 6 5 9 9 C 1.41479 * 120.35970 * 359.72929 * 6 5 4 10 10 C 1.41112 * 120.66825 * 179.97438 * 9 6 5 11 11 H 1.08001 * 120.00202 * 218.82814 * 10 9 6 12 12 C 1.39931 * 119.99825 * 38.82734 * 10 9 6 13 13 N 1.30867 * 120.00278 * 19.98495 * 12 10 9 14 14 Si 1.86808 * 120.00248 * 199.98853 * 12 10 9 15 15 H 1.48504 * 109.46741 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47031 * 119.99569 * 14 12 10 17 17 H 1.48494 * 109.46943 * 239.99957 * 14 12 10 18 18 C 1.38407 * 120.26480 * 179.97438 * 3 2 1 19 19 C 1.50696 * 120.88904 * 359.97438 * 18 3 2 20 20 F 1.39903 * 109.47090 * 119.99952 * 19 18 3 21 21 F 1.39895 * 109.47157 * 239.99390 * 19 18 3 22 22 H 1.08998 * 109.47866 * 300.00271 * 1 2 3 23 23 H 1.09006 * 109.47369 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46651 * 60.00453 * 1 2 3 25 25 H 1.07999 * 119.33226 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.46870 * 59.99989 * 8 7 6 27 27 H 1.08996 * 109.46964 * 180.02562 * 8 7 6 28 28 H 1.09002 * 109.47129 * 300.00775 * 8 7 6 29 29 H 0.96998 * 120.00261 * 180.02562 * 13 12 10 30 30 H 1.08995 * 109.47564 * 0.02562 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2937 2.3821 -0.0059 5 7 1.8710 3.5693 -0.0010 6 6 3.1840 3.7075 -0.0009 7 8 3.7308 4.9468 -0.0009 8 6 2.8277 6.0543 -0.0016 9 6 4.0230 2.5684 -0.0003 10 6 5.4271 2.7086 -0.0008 11 1 6.0368 2.0368 -0.5869 12 6 6.0296 3.7181 0.7582 13 7 5.3767 4.2701 1.7489 14 14 7.7662 4.2779 0.3572 15 1 8.2818 3.5018 -0.7991 16 1 7.7542 5.7236 0.0178 17 1 8.6430 4.0530 1.5343 18 6 3.4281 1.2903 0.0005 19 6 4.2741 0.0432 0.0017 20 9 5.0822 0.0268 -1.1403 21 9 5.0813 0.0283 1.1442 22 1 -0.3635 0.5138 0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8901 25 1 0.2157 2.3180 -0.0100 26 1 2.1995 6.0114 0.8881 27 1 3.3947 6.9853 -0.0020 28 1 2.2002 6.0110 -0.8918 29 1 5.7942 4.9701 2.2748 30 1 3.6277 -0.8344 0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390281739.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:24 Heat of formation + Delta-G solvation = -164.172462 kcal Electronic energy + Delta-G solvation = -20200.416778 eV Core-core repulsion = 16631.610431 eV Total energy + Delta-G solvation = -3568.806348 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.61839 -47.61554 -41.19227 -39.59523 -37.47430 -35.81729 -33.48339 -31.05223 -28.41728 -27.95750 -27.68515 -26.29501 -23.20221 -22.49052 -19.86501 -18.91618 -18.74579 -17.91982 -17.90514 -17.24025 -16.89775 -16.54667 -16.29687 -16.16083 -15.43328 -14.93516 -14.60951 -14.25660 -14.19990 -14.04157 -13.84819 -13.40255 -13.29578 -12.90686 -12.79889 -12.51717 -12.42860 -12.32191 -12.01221 -11.84680 -11.40805 -11.05536 -10.21209 -10.00858 -8.80179 -8.57421 -6.46574 0.57458 0.80221 1.39976 1.47203 1.54828 2.21800 2.47886 2.68055 2.80556 3.21739 3.38992 3.63497 3.90944 4.15095 4.30046 4.44416 4.50310 4.55014 4.57087 4.59577 4.70928 4.78978 4.86516 5.07076 5.33187 5.38345 5.52991 6.19882 6.36838 6.46743 6.75669 7.03393 7.48374 8.26544 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.010570 C = 0.007443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.718812 B = 2648.339768 C = 3761.050678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.332 6.332 3 C 0.115 3.885 4 C -0.096 4.096 5 N -0.505 5.505 6 C 0.225 3.775 7 O -0.294 6.294 8 C 0.045 3.955 9 C 0.094 3.906 10 C -0.460 4.460 11 H 0.084 0.916 12 C 0.052 3.948 13 N -0.778 5.778 14 Si 0.975 3.025 15 H -0.260 1.260 16 H -0.260 1.260 17 H -0.264 1.264 18 C -0.300 4.300 19 C 0.346 3.654 20 F -0.217 7.217 21 F -0.215 7.215 22 H 0.057 0.943 23 H 0.127 0.873 24 H 0.061 0.939 25 H 0.165 0.835 26 H 0.036 0.964 27 H 0.103 0.897 28 H 0.045 0.955 29 H 0.293 0.707 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 -2.698 -1.863 5.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.246 6.246 3 C 0.068 3.932 4 C -0.245 4.245 5 N -0.231 5.231 6 C 0.037 3.963 7 O -0.200 6.200 8 C -0.051 4.051 9 C 0.088 3.912 10 C -0.488 4.488 11 H 0.102 0.898 12 C -0.169 4.169 13 N -0.400 5.400 14 Si 0.796 3.204 15 H -0.184 1.184 16 H -0.184 1.184 17 H -0.188 1.188 18 C -0.308 4.308 19 C 0.293 3.707 20 F -0.199 7.199 21 F -0.196 7.196 22 H 0.076 0.924 23 H 0.145 0.855 24 H 0.079 0.921 25 H 0.182 0.818 26 H 0.055 0.945 27 H 0.122 0.878 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.073 -1.977 -1.652 5.690 hybrid contribution 0.665 -0.031 0.075 0.670 sum -4.408 -2.008 -1.576 5.094 Atomic orbital electron populations 1.23291 0.76526 1.05467 1.01943 1.85902 1.23503 1.25975 1.89180 1.19215 0.90953 0.85791 0.97246 1.21911 0.99312 0.85605 1.17644 1.66641 1.11331 1.28665 1.16429 1.20204 0.87252 0.85970 1.02914 1.86272 1.33893 1.11384 1.88466 1.22686 0.94048 0.87913 1.00444 1.17434 0.94599 0.88231 0.90939 1.19599 0.91148 1.13957 1.24137 0.89810 1.26538 1.04213 0.93637 0.92499 1.69760 1.40010 1.18540 1.11706 0.85254 0.76474 0.79135 0.79557 1.18408 1.18386 1.18842 1.19895 0.91335 0.94704 1.24858 1.19875 0.82718 0.97850 0.70292 1.92889 1.76833 1.97752 1.52394 1.92918 1.76780 1.97756 1.52193 0.92423 0.85513 0.92071 0.81759 0.94487 0.87833 0.93676 0.89656 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.33 -11.73 9.37 -93.23 -0.87 -12.61 16 3 C 0.12 5.06 6.67 22.53 0.15 5.21 16 4 C -0.10 -4.16 10.21 84.89 0.87 -3.29 16 5 N -0.51 -24.77 9.19 -306.50 -2.82 -27.59 16 6 C 0.22 11.96 7.01 85.46 0.60 12.56 16 7 O -0.29 -14.83 7.38 -87.45 -0.65 -15.48 16 8 C 0.05 1.79 10.38 113.37 1.18 2.96 16 9 C 0.09 5.15 5.36 -21.10 -0.11 5.03 16 10 C -0.46 -25.09 7.56 23.39 0.18 -24.91 16 11 H 0.08 4.59 6.58 -2.91 -0.02 4.57 16 12 C 0.05 2.64 4.43 85.25 0.38 3.02 16 13 N -0.78 -40.53 11.24 21.83 0.25 -40.28 16 14 Si 0.98 39.07 29.60 68.60 2.03 41.10 16 15 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 16 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 17 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 18 C -0.30 -14.87 5.45 -19.15 -0.10 -14.97 16 19 C 0.35 15.37 5.02 71.23 0.36 15.73 16 20 F -0.22 -9.91 15.86 44.97 0.71 -9.20 16 21 F -0.22 -10.31 16.67 44.97 0.75 -9.56 16 22 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 23 H 0.13 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.06 1.34 7.66 -2.39 -0.02 1.32 16 25 H 0.17 5.81 6.27 -2.91 -0.02 5.79 16 26 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 27 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 28 H 0.04 1.69 8.11 -2.39 -0.02 1.67 16 29 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 30 H 0.14 4.98 7.09 -2.39 -0.02 4.96 16 Total: -1.00 -64.59 268.62 5.19 -59.41 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.18 Total: 11.23 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 4.60 Total: 2.98 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -2.57 Total: -67.87 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.52 Total: -28.09 kcal Atomic # 9 Polarization: -20.22 SS G_CDS: 1.46 Total: -18.76 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -64.59 5.19 -59.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390281739.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.766 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds