Wall clock time and date at job start Mon Mar 30 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35976 * 117.00100 * 2 1 4 4 C 1.38446 * 120.26298 * 4.28926 * 3 2 1 5 5 C 1.40937 * 118.22323 * 180.02562 * 4 3 2 6 6 C 1.41111 * 120.66442 * 179.97438 * 5 4 3 7 7 H 1.08007 * 120.00116 * 153.06400 * 6 5 4 8 8 C 1.39941 * 120.00629 * 333.06659 * 6 5 4 9 9 N 1.30862 * 120.00335 * 162.77026 * 8 6 5 10 10 Si 1.86802 * 119.99515 * 342.76987 * 8 6 5 11 11 H 1.48501 * 109.47183 * 95.19191 * 10 8 6 12 12 H 1.48498 * 109.47038 * 215.19647 * 10 8 6 13 13 H 1.48507 * 109.47228 * 335.19631 * 10 8 6 14 14 C 1.41508 * 118.66683 * 0.02562 * 5 4 3 15 15 O 1.35452 * 119.82345 * 179.97438 * 14 5 4 16 16 C 1.42896 * 117.00331 * 179.97438 * 15 14 5 17 17 N 1.31992 * 120.36102 * 359.97438 * 14 5 4 18 18 C 1.32034 * 121.94279 * 0.02562 * 17 14 5 19 19 C 1.50700 * 119.33611 * 179.97438 * 18 17 14 20 20 F 1.39906 * 109.46842 * 29.99728 * 19 18 17 21 21 F 1.39891 * 109.47425 * 150.00023 * 19 18 17 22 22 H 1.09000 * 109.47284 * 299.29456 * 1 2 3 23 23 H 1.08998 * 109.46576 * 59.29118 * 1 2 3 24 24 H 1.08994 * 109.47305 * 179.28772 * 1 2 3 25 25 H 1.08001 * 120.89343 * 0.27117 * 4 3 2 26 26 H 0.97001 * 119.99959 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.47246 * 299.99273 * 16 15 14 28 28 H 1.08994 * 109.47390 * 59.99987 * 16 15 14 29 29 H 1.09000 * 109.47137 * 179.97438 * 16 15 14 30 30 H 1.09003 * 109.46962 * 270.00510 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.3007 2.3746 0.0894 5 6 1.9847 3.6069 0.0851 6 6 1.2758 4.8238 0.1734 7 1 1.7516 5.6965 0.5958 8 6 -0.0438 4.8999 -0.2864 9 7 -0.8105 5.8926 0.0868 10 14 -0.7107 3.5844 -1.4328 11 1 -1.4255 2.5525 -0.6394 12 1 -1.6506 4.2027 -2.4020 13 1 0.4139 2.9522 -2.1682 14 6 3.3965 3.5993 -0.0106 15 8 4.0775 4.7701 -0.0173 16 6 5.5010 4.6922 -0.1156 17 7 4.0534 2.4574 -0.0933 18 6 3.4322 1.2924 -0.0909 19 6 4.2408 0.0244 -0.1887 20 9 5.4964 0.2258 0.3946 21 9 3.5746 -1.0064 0.4826 22 1 -0.3634 0.5028 0.8962 23 1 -0.3632 0.5248 -0.8836 24 1 -0.3633 -1.0275 -0.0128 25 1 0.2239 2.3385 0.1646 26 1 -1.7252 5.9451 -0.2316 27 1 5.8935 4.1301 0.7319 28 1 5.7742 4.1892 -1.0431 29 1 5.9211 5.6979 -0.1107 30 1 4.3665 -0.2464 -1.2371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390342832.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:25 Heat of formation + Delta-G solvation = -146.365217 kcal Electronic energy + Delta-G solvation = -19979.323981 eV Core-core repulsion = 16411.289814 eV Total energy + Delta-G solvation = -3568.034167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.15808 -46.18344 -39.69660 -38.11049 -36.10518 -34.39742 -31.79570 -29.69448 -27.48133 -27.06126 -26.37523 -23.73420 -21.76680 -21.16836 -18.12089 -17.64037 -17.15811 -16.76628 -16.51095 -15.76623 -15.48648 -15.17067 -14.83837 -14.77417 -13.94433 -13.46882 -13.20582 -12.99289 -12.59157 -12.53730 -12.36847 -12.22638 -11.89201 -11.41885 -11.24498 -11.08018 -10.99881 -10.81908 -10.40747 -10.17368 -9.86288 -9.72141 -8.70119 -8.47195 -7.35630 -7.20530 -4.81000 2.06054 2.42597 2.78910 2.95812 3.04670 3.65873 3.84258 4.11824 4.21381 4.49745 4.89384 5.01058 5.34031 5.48738 5.55160 5.69659 5.79607 5.87228 5.97101 6.07846 6.09239 6.21257 6.28610 6.49155 6.62676 7.08948 7.23774 7.73850 7.94729 7.95231 8.32995 8.51449 9.00817 9.62866 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.010437 C = 0.007029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.358232 B = 2682.165659 C = 3982.503693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.141 3.859 4 C -0.308 4.308 5 C 0.081 3.919 6 C -0.385 4.385 7 H 0.108 0.892 8 C 0.079 3.921 9 N -0.774 5.774 10 Si 0.913 3.087 11 H -0.266 1.266 12 H -0.284 1.284 13 H -0.241 1.241 14 C 0.216 3.784 15 O -0.301 6.301 16 C 0.046 3.954 17 N -0.461 5.461 18 C -0.114 4.114 19 C 0.352 3.648 20 F -0.206 7.206 21 F -0.199 7.199 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.093 0.907 25 H 0.125 0.875 26 H 0.294 0.706 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 -6.194 -2.708 6.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.093 3.907 4 C -0.332 4.332 5 C 0.074 3.926 6 C -0.413 4.413 7 H 0.126 0.874 8 C -0.145 4.145 9 N -0.396 5.396 10 Si 0.739 3.261 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.164 1.164 14 C 0.025 3.975 15 O -0.208 6.208 16 C -0.051 4.051 17 N -0.185 5.185 18 C -0.244 4.244 19 C 0.298 3.702 20 F -0.187 7.187 21 F -0.181 7.181 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.112 0.888 25 H 0.142 0.858 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.270 -6.027 -2.699 6.983 hybrid contribution -1.364 -0.375 -0.229 1.433 sum 0.906 -6.403 -2.928 7.098 Atomic orbital electron populations 1.23004 0.79798 1.02786 1.01183 1.86094 1.20189 1.27079 1.88932 1.19190 0.91765 0.84215 0.95500 1.20963 0.98934 0.90968 1.22341 1.17531 0.88913 0.93624 0.92519 1.19614 0.95219 0.96976 1.29464 0.87416 1.26368 0.95961 0.96534 0.95625 1.69670 1.08018 1.28653 1.33238 0.86289 0.79618 0.79907 0.80268 1.19187 1.21093 1.16364 1.19679 0.88818 0.83319 1.05661 1.86153 1.19339 1.25984 1.89327 1.22584 0.79953 1.01268 1.01254 1.66197 1.39856 0.97166 1.15247 1.19292 0.87732 0.91877 1.25462 1.19601 0.75159 0.83150 0.92330 1.92927 1.43177 1.95535 1.87097 1.92965 1.81099 1.60487 1.83513 0.92914 0.93528 0.88846 0.85778 0.89529 0.93445 0.93503 0.90064 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.83 101.05 0.99 1.45 16 2 O -0.31 -6.24 8.39 -19.66 -0.16 -6.41 16 3 C 0.14 3.19 6.57 -39.18 -0.26 2.93 16 4 C -0.31 -7.23 6.15 -38.48 -0.24 -7.47 16 5 C 0.08 2.02 5.21 -106.54 -0.55 1.47 16 6 C -0.39 -9.86 9.25 -37.86 -0.35 -10.21 16 7 H 0.11 2.91 7.86 -52.48 -0.41 2.50 16 8 C 0.08 1.90 5.44 -17.33 -0.09 1.80 16 9 N -0.77 -18.77 13.93 55.55 0.77 -18.00 16 10 Si 0.91 19.01 23.70 -169.99 -4.03 14.99 16 11 H -0.27 -5.13 6.40 56.52 0.36 -4.77 16 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.24 -5.25 6.71 56.52 0.38 -4.87 16 14 C 0.22 5.29 7.54 -16.24 -0.12 5.17 16 15 O -0.30 -6.85 9.80 -18.05 -0.18 -7.02 16 16 C 0.05 0.81 10.38 101.05 1.05 1.86 16 17 N -0.46 -10.89 8.78 -8.72 -0.08 -10.96 16 18 C -0.11 -2.59 6.61 -82.18 -0.54 -3.13 16 19 C 0.35 6.85 5.63 36.01 0.20 7.06 16 20 F -0.21 -4.14 17.05 2.25 0.04 -4.10 16 21 F -0.20 -3.94 15.27 2.25 0.03 -3.90 16 22 H 0.05 0.85 7.54 -51.93 -0.39 0.46 16 23 H 0.05 0.75 6.79 -51.93 -0.35 0.40 16 24 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.12 2.77 2.75 -52.49 -0.14 2.63 16 26 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 27 H 0.05 0.84 8.11 -51.93 -0.42 0.42 16 28 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 263.61 15.07 3.97 3.97 Total: -1.00 -27.78 263.61 -2.15 -29.93 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -2.61 Total: 0.59 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 0.09 Total: 0.93 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: 0.70 Total: -28.97 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.34 Total: -13.43 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.01 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.03 Total: 14.99 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.78 -2.15 -29.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390342832.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.434 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds