Wall clock time and date at job start Mon Mar 30 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35976 * 117.00100 * 2 1 4 4 C 1.38446 * 120.26298 * 4.28926 * 3 2 1 5 5 C 1.40937 * 118.22323 * 180.02562 * 4 3 2 6 6 C 1.41111 * 120.66442 * 179.97438 * 5 4 3 7 7 H 1.08007 * 120.00116 * 153.06400 * 6 5 4 8 8 C 1.39941 * 120.00629 * 333.06659 * 6 5 4 9 9 N 1.30862 * 120.00335 * 162.77026 * 8 6 5 10 10 Si 1.86802 * 119.99515 * 342.76987 * 8 6 5 11 11 H 1.48501 * 109.47183 * 95.19191 * 10 8 6 12 12 H 1.48498 * 109.47038 * 215.19647 * 10 8 6 13 13 H 1.48507 * 109.47228 * 335.19631 * 10 8 6 14 14 C 1.41508 * 118.66683 * 0.02562 * 5 4 3 15 15 O 1.35452 * 119.82345 * 179.97438 * 14 5 4 16 16 C 1.42896 * 117.00331 * 179.97438 * 15 14 5 17 17 N 1.31992 * 120.36102 * 359.97438 * 14 5 4 18 18 C 1.32034 * 121.94279 * 0.02562 * 17 14 5 19 19 C 1.50700 * 119.33611 * 179.97438 * 18 17 14 20 20 F 1.39906 * 109.46842 * 29.99728 * 19 18 17 21 21 F 1.39891 * 109.47425 * 150.00023 * 19 18 17 22 22 H 1.09000 * 109.47284 * 299.29456 * 1 2 3 23 23 H 1.08998 * 109.46576 * 59.29118 * 1 2 3 24 24 H 1.08994 * 109.47305 * 179.28772 * 1 2 3 25 25 H 1.08001 * 120.89343 * 0.27117 * 4 3 2 26 26 H 0.97001 * 119.99959 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.47246 * 299.99273 * 16 15 14 28 28 H 1.08994 * 109.47390 * 59.99987 * 16 15 14 29 29 H 1.09000 * 109.47137 * 179.97438 * 16 15 14 30 30 H 1.09003 * 109.46962 * 270.00510 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.3007 2.3746 0.0894 5 6 1.9847 3.6069 0.0851 6 6 1.2758 4.8238 0.1734 7 1 1.7516 5.6965 0.5958 8 6 -0.0438 4.8999 -0.2864 9 7 -0.8105 5.8926 0.0868 10 14 -0.7107 3.5844 -1.4328 11 1 -1.4255 2.5525 -0.6394 12 1 -1.6506 4.2027 -2.4020 13 1 0.4139 2.9522 -2.1682 14 6 3.3965 3.5993 -0.0106 15 8 4.0775 4.7701 -0.0173 16 6 5.5010 4.6922 -0.1156 17 7 4.0534 2.4574 -0.0933 18 6 3.4322 1.2924 -0.0909 19 6 4.2408 0.0244 -0.1887 20 9 5.4964 0.2258 0.3946 21 9 3.5746 -1.0064 0.4826 22 1 -0.3634 0.5028 0.8962 23 1 -0.3632 0.5248 -0.8836 24 1 -0.3633 -1.0275 -0.0128 25 1 0.2239 2.3385 0.1646 26 1 -1.7252 5.9451 -0.2316 27 1 5.8935 4.1301 0.7319 28 1 5.7742 4.1892 -1.0431 29 1 5.9211 5.6979 -0.1107 30 1 4.3665 -0.2464 -1.2371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390342832.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:24 Heat of formation + Delta-G solvation = -166.458759 kcal Electronic energy + Delta-G solvation = -19980.195303 eV Core-core repulsion = 16411.289814 eV Total energy + Delta-G solvation = -3568.905489 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.71040 -47.73754 -41.43086 -39.73848 -37.79176 -36.20841 -33.60931 -31.37907 -29.16076 -28.55675 -27.86957 -25.44412 -23.46176 -22.91463 -19.91200 -19.32436 -18.82713 -18.29898 -18.17487 -17.37783 -17.15835 -16.75039 -16.40587 -16.39760 -15.63098 -15.07724 -14.77197 -14.56457 -14.25099 -14.10471 -14.05714 -13.89206 -13.51089 -12.99892 -12.90017 -12.56106 -12.48720 -12.42508 -12.03135 -11.89531 -11.49681 -11.43715 -10.50100 -10.27149 -9.14868 -8.95153 -6.69416 0.26057 0.60966 1.12424 1.30163 1.39161 1.97892 2.30501 2.33089 2.58800 2.92922 3.18303 3.33524 3.66560 4.17793 4.19061 4.30169 4.32484 4.44043 4.51901 4.53702 4.59754 4.63337 4.71498 4.83262 4.87852 5.28358 5.47267 5.89511 6.06168 6.28526 6.44302 6.77205 7.19301 7.89899 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.010437 C = 0.007029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.358232 B = 2682.165659 C = 3982.503693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.311 6.311 3 C 0.137 3.863 4 C -0.307 4.307 5 C 0.064 3.936 6 C -0.419 4.419 7 H 0.074 0.926 8 C 0.050 3.950 9 N -0.806 5.806 10 Si 0.957 3.043 11 H -0.238 1.238 12 H -0.266 1.266 13 H -0.257 1.257 14 C 0.194 3.806 15 O -0.321 6.321 16 C 0.042 3.958 17 N -0.463 5.463 18 C -0.120 4.120 19 C 0.354 3.646 20 F -0.210 7.210 21 F -0.199 7.199 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.136 0.864 25 H 0.135 0.865 26 H 0.306 0.694 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.116 0.884 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -8.346 -3.544 9.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.223 6.223 3 C 0.088 3.912 4 C -0.332 4.332 5 C 0.058 3.942 6 C -0.446 4.446 7 H 0.092 0.908 8 C -0.171 4.171 9 N -0.429 5.429 10 Si 0.779 3.221 11 H -0.163 1.163 12 H -0.192 1.192 13 H -0.181 1.181 14 C 0.005 3.995 15 O -0.229 6.229 16 C -0.053 4.053 17 N -0.187 5.187 18 C -0.251 4.251 19 C 0.299 3.701 20 F -0.192 7.192 21 F -0.181 7.181 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.154 0.846 25 H 0.152 0.848 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.873 -8.159 -3.518 9.081 hybrid contribution -1.143 0.207 0.069 1.164 sum 0.730 -7.952 -3.449 8.699 Atomic orbital electron populations 1.23397 0.77552 1.05747 1.01245 1.86098 1.22424 1.25390 1.88433 1.19259 0.92037 0.84905 0.94968 1.21143 0.99635 0.90794 1.21606 1.17742 0.89603 0.94032 0.92795 1.19469 0.96505 0.96470 1.32204 0.90755 1.26975 0.95513 0.98343 0.96265 1.69665 1.08919 1.29944 1.34335 0.85651 0.79029 0.78460 0.78981 1.16280 1.19222 1.18104 1.19875 0.89147 0.84033 1.06493 1.86127 1.21740 1.25714 1.89312 1.22862 0.77575 1.03623 1.01250 1.66285 1.39980 0.97298 1.15126 1.20051 0.88700 0.92868 1.23526 1.19868 0.74321 0.81669 0.94207 1.92921 1.43319 1.95525 1.87406 1.92963 1.81148 1.60161 1.83801 0.92936 0.93302 0.84583 0.84769 0.88270 0.93686 0.93123 0.86546 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.83 113.37 1.11 1.55 16 2 O -0.31 -11.54 8.39 -93.28 -0.78 -12.32 16 3 C 0.14 5.93 6.57 22.53 0.15 6.08 16 4 C -0.31 -14.16 6.15 22.98 0.14 -14.02 16 5 C 0.06 3.28 5.21 -21.11 -0.11 3.17 16 6 C -0.42 -22.29 9.25 23.39 0.22 -22.07 16 7 H 0.07 4.30 7.86 -2.91 -0.02 4.28 16 8 C 0.05 2.42 5.44 85.25 0.46 2.89 16 9 N -0.81 -39.71 13.93 21.83 0.30 -39.40 16 10 Si 0.96 37.93 23.70 68.60 1.63 39.55 16 11 H -0.24 -8.30 6.40 99.48 0.64 -7.67 16 12 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 13 H -0.26 -10.83 6.71 99.48 0.67 -10.16 16 14 C 0.19 9.61 7.54 85.48 0.64 10.25 16 15 O -0.32 -14.94 9.80 -87.49 -0.86 -15.80 16 16 C 0.04 1.48 10.38 113.37 1.18 2.65 16 17 N -0.46 -21.56 8.78 -294.64 -2.59 -24.15 16 18 C -0.12 -5.25 6.61 42.74 0.28 -4.97 16 19 C 0.35 12.75 5.63 71.24 0.40 13.15 16 20 F -0.21 -7.97 17.05 44.97 0.77 -7.21 16 21 F -0.20 -7.28 15.27 44.97 0.69 -6.59 16 22 H 0.05 1.52 7.54 -2.39 -0.02 1.50 16 23 H 0.05 1.39 6.79 -2.39 -0.02 1.38 16 24 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.14 5.78 2.75 -2.91 -0.01 5.77 16 26 H 0.31 13.19 8.30 -92.71 -0.77 12.42 16 27 H 0.04 1.58 8.11 -2.39 -0.02 1.56 16 28 H 0.05 1.71 8.10 -2.39 -0.02 1.70 16 29 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 Total: -1.00 -60.32 263.61 4.72 -55.60 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.08 Total: 11.63 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 4.48 Total: -1.31 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -2.28 Total: -63.55 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.64 Total: -28.13 kcal Atomic # 9 Polarization: -15.25 SS G_CDS: 1.45 Total: -13.80 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.63 Total: 39.55 kcal Total: -60.32 4.72 -55.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390342832.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.858 kcal (2) G-P(sol) polarization free energy of solvation -60.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds