Wall clock time and date at job start Mon Mar 30 2020 06:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35654 * 117.00345 * 2 1 4 4 N 1.31653 * 119.61444 * 359.97291 * 3 2 1 5 5 C 1.33796 * 121.49882 * 180.02562 * 4 3 2 6 6 C 1.41073 * 119.72908 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00054 * 179.97438 * 6 5 4 8 8 C 1.39989 * 119.99792 * 0.02562 * 6 5 4 9 9 N 1.30791 * 119.99650 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99899 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47167 * 89.99754 * 10 8 6 12 12 H 1.48499 * 109.47158 * 210.00211 * 10 8 6 13 13 H 1.48502 * 109.46990 * 329.99865 * 10 8 6 14 14 C 1.40734 * 120.54495 * 359.97438 * 5 4 3 15 15 C 1.38022 * 119.19281 * 359.78552 * 14 5 4 16 16 C 1.50701 * 120.69539 * 180.23498 * 15 14 5 17 17 F 1.39902 * 109.46813 * 30.24820 * 16 15 14 18 18 F 1.39901 * 109.47304 * 150.24497 * 16 15 14 19 19 C 1.39332 * 118.61210 * 0.47650 * 15 14 5 20 20 O 1.35715 * 120.31056 * 179.75361 * 19 15 14 21 21 C 1.42893 * 117.00103 * 269.72717 * 20 19 15 22 22 H 1.09003 * 109.47467 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47191 * 300.00023 * 1 2 3 24 24 H 1.08995 * 109.47524 * 60.00307 * 1 2 3 25 25 H 0.97005 * 119.99750 * 179.97438 * 9 8 6 26 26 H 1.08004 * 120.40035 * 180.02562 * 14 5 4 27 27 H 1.09000 * 109.47017 * 270.25215 * 16 15 14 28 28 H 1.09005 * 109.47515 * 179.97438 * 21 20 19 29 29 H 1.08996 * 109.47255 * 299.99772 * 21 20 19 30 30 H 1.09004 * 109.47453 * 59.99455 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 7 1.3205 2.3080 -0.0005 5 6 1.8884 3.5194 -0.0011 6 6 1.0762 4.6729 -0.0011 7 1 1.5300 5.6529 -0.0011 8 6 -0.3180 4.5471 0.0000 9 7 -0.8675 3.3602 0.0005 10 14 -1.3935 6.0744 0.0007 11 1 -1.6795 6.4790 -1.3992 12 1 -2.6693 5.7811 0.7017 13 1 -0.6866 7.1772 0.7001 14 6 3.2895 3.6525 -0.0005 15 6 4.0736 2.5166 0.0051 16 6 5.5771 2.6198 0.0112 17 9 5.9615 3.7898 0.6748 18 9 6.1179 1.5106 0.6703 19 6 3.4461 1.2726 -0.0002 20 8 4.1837 0.1334 0.0001 21 6 4.5360 -0.4115 -1.2730 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -1.8336 3.2731 0.0016 26 1 3.7455 4.6315 -0.0005 27 1 5.9435 2.6470 -1.0150 28 1 5.1238 -1.3183 -1.1301 29 1 3.6297 -0.6496 -1.8298 30 1 5.1238 0.3179 -1.8305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390665253.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:48 Heat of formation + Delta-G solvation = -160.294654 kcal Electronic energy + Delta-G solvation = -19914.263336 eV Core-core repulsion = 16345.625143 eV Total energy + Delta-G solvation = -3568.638193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.86548 -47.87662 -41.08688 -38.75208 -38.28633 -35.42272 -33.11275 -31.36896 -28.87058 -27.96684 -27.23233 -26.13261 -23.21396 -22.73842 -19.86961 -18.84314 -18.42398 -18.30728 -18.15173 -17.02083 -16.79869 -16.74017 -16.53248 -15.81563 -15.41918 -14.86546 -14.75425 -14.44301 -14.24207 -13.92790 -13.80112 -13.65669 -13.08444 -12.90076 -12.80378 -12.53864 -12.27562 -12.17139 -11.93579 -11.84109 -11.09486 -11.02170 -10.18618 -9.74207 -9.14455 -8.46016 -6.63610 0.53368 0.75800 1.42662 1.49949 1.56588 2.18928 2.39038 2.61515 2.96008 3.14998 3.38009 3.65009 3.83477 4.06664 4.19184 4.45890 4.57099 4.61455 4.63360 4.70026 4.74363 4.89875 4.97958 5.11489 5.26854 5.37746 5.60095 5.99936 6.38185 6.49950 6.68292 7.06502 7.84913 8.29518 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.008145 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.032208 B = 3436.681049 C = 4579.462761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.326 6.326 3 C 0.310 3.690 4 N -0.538 5.538 5 C 0.244 3.756 6 C -0.434 4.434 7 H 0.103 0.897 8 C 0.023 3.977 9 N -0.736 5.736 10 Si 0.992 3.008 11 H -0.261 1.261 12 H -0.269 1.269 13 H -0.254 1.254 14 C -0.264 4.264 15 C -0.099 4.099 16 C 0.325 3.675 17 F -0.206 7.206 18 F -0.198 7.198 19 C -0.113 4.113 20 O -0.323 6.323 21 C 0.028 3.972 22 H 0.115 0.885 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.284 0.716 26 H 0.129 0.871 27 H 0.153 0.847 28 H 0.107 0.893 29 H 0.028 0.972 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -1.047 -3.335 4.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.234 6.234 3 C 0.123 3.877 4 N -0.268 5.268 5 C 0.120 3.880 6 C -0.464 4.464 7 H 0.121 0.879 8 C -0.201 4.201 9 N -0.357 5.357 10 Si 0.812 3.188 11 H -0.186 1.186 12 H -0.194 1.194 13 H -0.178 1.178 14 C -0.286 4.286 15 C -0.105 4.105 16 C 0.272 3.728 17 F -0.188 7.188 18 F -0.180 7.180 19 C -0.162 4.162 20 O -0.239 6.239 21 C -0.067 4.067 22 H 0.133 0.867 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.147 0.853 27 H 0.170 0.830 28 H 0.126 0.874 29 H 0.047 0.953 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.475 -1.599 -3.143 4.308 hybrid contribution 0.007 0.659 -0.071 0.663 sum 2.482 -0.940 -3.214 4.168 Atomic orbital electron populations 1.22663 0.77158 1.02306 1.01500 1.86129 1.23317 1.25585 1.88342 1.20803 0.88615 0.86428 0.91841 1.68404 1.36436 0.97122 1.24844 1.18628 0.89841 0.90469 0.89066 1.20089 0.91908 0.93314 1.41125 0.87917 1.27047 0.99858 1.00659 0.92519 1.70189 1.12805 1.25832 1.26879 0.85040 0.77012 0.77208 0.79552 1.18588 1.19389 1.17772 1.21553 0.94046 0.97343 1.15652 1.20653 0.95008 0.93237 1.01616 1.20299 0.88184 0.70643 0.93718 1.92947 1.92065 1.49564 1.84193 1.92992 1.87014 1.53807 1.84145 1.17800 0.86636 0.85989 1.25740 1.86084 1.70339 1.38356 1.29094 1.23085 0.98954 0.98962 0.85692 0.86690 0.94252 0.93912 0.90501 0.85307 0.82988 0.87449 0.95331 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.36 10.38 113.37 1.18 3.54 16 2 O -0.33 -15.37 10.27 -76.02 -0.78 -16.15 16 3 C 0.31 15.92 7.52 85.21 0.64 16.56 16 4 N -0.54 -29.02 6.68 -302.00 -2.02 -31.04 16 5 C 0.24 12.84 6.55 40.15 0.26 13.10 16 6 C -0.43 -21.64 9.12 23.39 0.21 -21.43 16 7 H 0.10 4.68 7.85 -2.91 -0.02 4.66 16 8 C 0.02 1.08 5.50 85.27 0.47 1.55 16 9 N -0.74 -36.09 11.45 21.83 0.25 -35.84 16 10 Si 0.99 34.73 29.56 68.60 2.03 36.76 16 11 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 12 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 13 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 14 C -0.26 -12.45 9.19 22.83 0.21 -12.24 16 15 C -0.10 -4.38 5.76 -19.65 -0.11 -4.49 16 16 C 0.32 11.56 5.60 71.24 0.40 11.96 16 17 F -0.21 -7.48 16.56 44.97 0.74 -6.74 16 18 F -0.20 -7.53 15.44 44.97 0.69 -6.84 16 19 C -0.11 -5.39 5.70 23.03 0.13 -5.26 16 20 O -0.32 -14.05 8.28 -76.68 -0.63 -14.69 16 21 C 0.03 0.92 11.13 113.37 1.26 2.19 16 22 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 23 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 24 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 25 H 0.28 12.47 8.30 -92.70 -0.77 11.71 16 26 H 0.13 5.54 7.68 -2.91 -0.02 5.52 16 27 H 0.15 4.08 8.14 -2.39 -0.02 4.06 16 28 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -61.71 276.73 6.11 -55.61 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.17 Total: 13.45 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 4.65 Total: 5.47 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -1.77 Total: -66.87 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -1.42 Total: -30.84 kcal Atomic # 9 Polarization: -15.02 SS G_CDS: 1.44 Total: -13.58 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Total: -61.71 6.11 -55.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390665253.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.689 kcal (2) G-P(sol) polarization free energy of solvation -61.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds