Wall clock time and date at job start Mon Mar 30 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47306 * 2 1 4 4 C 1.50702 * 109.47240 * 119.99793 * 2 1 3 5 5 H 1.08000 * 119.99759 * 119.99914 * 4 2 1 6 6 C 1.37880 * 119.99984 * 300.00194 * 4 2 1 7 7 N 1.31515 * 120.00105 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99822 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47185 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47070 * 119.99924 * 8 6 4 11 11 H 1.48508 * 109.46840 * 239.99854 * 8 6 4 12 12 S 1.80994 * 109.47260 * 240.00027 * 2 1 3 13 13 C 1.76199 * 100.00076 * 64.99752 * 12 2 1 14 14 N 1.32044 * 120.14983 * 0.02562 * 13 12 2 15 15 C 1.32634 * 122.63072 * 180.02562 * 14 13 12 16 16 C 1.36084 * 121.99774 * 359.95219 * 15 14 13 17 17 C 1.40870 * 118.87577 * 0.02562 * 16 15 14 18 18 C 1.40171 * 122.17288 * 179.97438 * 17 16 15 19 19 C 1.36292 * 119.47452 * 180.02562 * 18 17 16 20 20 C 1.39267 * 120.97334 * 359.97438 * 19 18 17 21 21 C 1.36325 * 121.03562 * 0.02562 * 20 19 18 22 22 C 1.40044 * 119.54042 * 359.97438 * 21 20 19 23 23 H 1.09004 * 109.47051 * 59.99795 * 1 2 3 24 24 H 1.08991 * 109.47376 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46843 * 300.00159 * 1 2 3 26 26 H 0.96999 * 119.99847 * 179.97438 * 7 6 4 27 27 H 1.07996 * 119.00308 * 179.97438 * 15 14 13 28 28 H 1.08001 * 120.56256 * 180.02562 * 16 15 14 29 29 H 1.07996 * 120.25760 * 0.02580 * 18 17 16 30 30 H 1.08009 * 119.51111 * 179.97438 * 19 18 17 31 31 H 1.08004 * 119.48185 * 180.28503 * 20 19 18 32 32 H 1.08007 * 120.22756 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.1455 -2.2876 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1660 -1.5866 4.8161 12 16 2.1333 -0.8532 -1.4778 13 6 1.5439 0.2422 -2.7257 14 7 0.8686 1.3265 -2.3913 15 6 0.4021 2.1839 -3.2893 16 6 0.5902 2.0028 -4.6249 17 6 1.3019 0.8693 -5.0641 18 6 1.5353 0.6147 -6.4226 19 6 2.2304 -0.4998 -6.7863 20 6 2.7123 -1.3883 -5.8282 21 6 2.5028 -1.1703 -4.4989 22 6 1.7925 -0.0351 -4.0890 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7089 1.1614 3.4844 27 1 -0.1433 3.0522 -2.9504 28 1 0.2004 2.7161 -5.3360 29 1 1.1671 1.2962 -7.1751 30 1 2.4102 -0.6968 -7.8329 31 1 3.2642 -2.2617 -6.1431 32 1 2.8820 -1.8682 -3.7670 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401644252.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:26 Heat of formation + Delta-G solvation = 29.928857 kcal Electronic energy + Delta-G solvation = -16207.552084 eV Core-core repulsion = 13644.145002 eV Total energy + Delta-G solvation = -2563.407082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.58220 -38.25005 -36.05357 -33.93132 -32.52526 -31.91926 -30.46528 -27.36630 -25.33523 -24.48185 -23.41377 -23.09710 -19.36463 -18.69586 -18.15052 -17.68629 -17.01337 -16.37061 -15.72573 -15.58270 -15.33737 -14.98542 -14.56037 -14.42022 -13.92960 -13.71157 -13.33238 -12.98744 -12.86022 -12.70794 -12.54229 -12.40603 -12.19473 -11.86291 -11.42283 -11.28385 -10.90186 -10.55177 -10.26578 -10.05375 -9.49686 -8.29164 -8.20743 -6.40589 -0.61434 -0.00697 0.80767 0.94281 1.40530 1.41197 1.53681 1.68748 2.13020 2.38776 3.06587 3.10700 3.63553 3.73022 3.88400 4.01057 4.13740 4.34586 4.45162 4.52738 4.70931 4.82586 4.89972 4.94611 5.05959 5.10545 5.19889 5.37897 5.49610 5.51716 5.59621 5.67334 5.84602 5.98511 6.03917 6.63370 6.96412 7.27030 8.84102 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.038323 B = 0.005415 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.459869 B = 5169.200165 C = 5789.258521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.100 3.900 3 H 0.020 0.980 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.024 3.976 7 N -0.910 5.910 8 Si 0.971 3.029 9 H -0.266 1.266 10 H -0.275 1.275 11 H -0.274 1.274 12 S -0.106 6.106 13 C 0.140 3.860 14 N -0.520 5.520 15 C 0.066 3.934 16 C -0.160 4.160 17 C -0.034 4.034 18 C -0.113 4.113 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.107 4.107 22 C -0.113 4.113 23 H 0.046 0.954 24 H 0.023 0.977 25 H 0.065 0.935 26 H 0.267 0.733 27 H 0.168 0.832 28 H 0.176 0.824 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -0.649 -19.175 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.029 4.029 3 H 0.038 0.962 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.199 1.199 12 S 0.139 5.861 13 C -0.120 4.120 14 N -0.234 5.234 15 C -0.081 4.081 16 C -0.183 4.183 17 C -0.040 4.040 18 C -0.131 4.131 19 C -0.112 4.112 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.120 4.120 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.185 0.815 28 H 0.194 0.806 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.174 0.826 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.207 -1.351 -18.144 18.234 hybrid contribution -0.430 0.866 0.735 1.215 sum 0.776 -0.486 -17.409 17.433 Atomic orbital electron populations 1.21795 0.95934 0.98876 1.01302 1.20629 0.96293 0.95877 0.90055 0.96220 1.21035 1.33080 1.13335 0.90364 0.92147 1.25766 0.94659 0.95554 1.01781 1.70044 1.36480 1.23596 1.24623 0.85307 0.78330 0.78575 0.78270 1.18981 1.20066 1.19939 1.85093 1.68530 1.32457 1.00058 1.23799 0.96885 0.96223 0.95127 1.67910 1.11871 1.03863 1.39735 1.22596 0.97516 0.97628 0.90371 1.22134 1.00745 0.98457 0.96985 1.18498 0.96711 0.94180 0.94634 1.21331 0.99443 0.99174 0.93105 1.21447 0.95309 0.93080 1.01380 1.21306 0.99462 1.00809 0.91565 1.21111 0.97810 0.95711 0.98099 1.18800 1.02778 0.98683 0.91744 0.93534 0.95740 0.91630 0.92342 0.81512 0.80624 0.81655 0.81557 0.82646 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.40 8.74 71.98 0.63 -5.77 16 2 C 0.10 5.49 2.14 29.85 0.06 5.56 16 3 H 0.02 1.21 7.98 -2.39 -0.02 1.19 16 4 C -0.54 -31.02 8.58 25.60 0.22 -30.81 16 5 H 0.06 3.43 7.71 -2.91 -0.02 3.41 16 6 C 0.02 1.35 5.30 84.66 0.45 1.80 16 7 N -0.91 -53.33 11.32 21.45 0.24 -53.09 16 8 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 9 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 S -0.11 -4.93 19.95 -56.49 -1.13 -6.06 16 13 C 0.14 5.97 6.83 85.42 0.58 6.55 16 14 N -0.52 -22.41 6.87 -191.81 -1.32 -23.73 16 15 C 0.07 2.19 11.06 84.07 0.93 3.12 16 16 C -0.16 -4.18 9.87 22.41 0.22 -3.96 16 17 C -0.03 -0.95 5.75 -21.30 -0.12 -1.07 16 18 C -0.11 -2.15 9.81 22.29 0.22 -1.93 16 19 C -0.09 -1.55 9.95 22.06 0.22 -1.33 16 20 C -0.11 -2.33 9.95 22.07 0.22 -2.11 16 21 C -0.11 -3.17 9.42 22.26 0.21 -2.96 16 22 C -0.11 -3.93 5.75 -21.21 -0.12 -4.05 16 23 H 0.05 2.35 5.67 -2.38 -0.01 2.34 16 24 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 26 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.17 4.63 8.06 -2.91 -0.02 4.61 16 28 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.13 3.84 6.95 -2.91 -0.02 3.82 16 Total: -1.00 -69.61 283.28 4.67 -64.94 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.12 Total: 8.87 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 3.72 Total: -36.96 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -1.08 Total: -76.81 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -1.13 Total: -6.06 kcal Total: -69.61 4.67 -64.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401644252.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.873 kcal (2) G-P(sol) polarization free energy of solvation -69.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds