Wall clock time and date at job start Mon Mar 30 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46824 * 2 1 4 4 C 1.50698 * 109.47102 * 239.99743 * 2 1 3 5 5 N 1.28796 * 124.98934 * 120.24764 * 4 2 1 6 6 C 1.33652 * 116.05775 * 180.22833 * 5 4 2 7 7 C 1.41158 * 122.86368 * 179.82764 * 6 5 4 8 8 H 1.07999 * 119.99650 * 186.32221 * 7 6 5 9 9 C 1.39722 * 119.99774 * 6.32697 * 7 6 5 10 10 N 1.31019 * 119.99564 * 182.94235 * 9 7 6 11 11 Si 1.86793 * 120.00069 * 2.93647 * 9 7 6 12 12 H 1.48506 * 109.46998 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47381 * 300.00498 * 11 9 7 14 14 H 1.48506 * 109.47233 * 60.00294 * 11 9 7 15 15 C 1.37706 * 114.27231 * 359.55315 * 6 5 4 16 16 S 1.70986 * 108.84026 * 0.23691 * 15 6 5 17 17 C 1.50702 * 109.47098 * 119.99688 * 2 1 3 18 18 C 1.38233 * 120.00133 * 59.72783 * 17 2 1 19 19 C 1.38236 * 119.99886 * 179.80461 * 18 17 2 20 20 C 1.38233 * 119.99910 * 0.40124 * 19 18 17 21 21 C 1.38227 * 120.00193 * 359.85652 * 20 19 18 22 22 C 1.38235 * 119.99602 * 239.99876 * 17 2 1 23 23 H 1.09002 * 109.47163 * 299.99639 * 1 2 3 24 24 H 1.08990 * 109.47511 * 60.00458 * 1 2 3 25 25 H 1.09009 * 109.47052 * 180.02562 * 1 2 3 26 26 H 0.97002 * 120.00100 * 354.80936 * 10 9 7 27 27 H 1.08003 * 125.57645 * 180.23026 * 15 6 5 28 28 H 1.07999 * 119.99677 * 359.97438 * 18 17 2 29 29 H 1.08001 * 119.99990 * 180.23231 * 19 18 17 30 30 H 1.08006 * 119.99603 * 179.82929 * 20 19 18 31 31 H 1.08002 * 120.00313 * 179.97438 * 21 20 19 32 32 H 1.08000 * 120.00722 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7796 -0.1807 -2.1358 6 6 3.1173 -0.9744 -3.1567 7 6 3.9272 -0.5410 -4.2285 8 1 4.0880 -1.1866 -5.0792 9 6 4.5210 0.7232 -4.1887 10 7 5.2253 1.1484 -5.2083 11 14 4.3104 1.8069 -2.6820 12 1 5.0322 3.0881 -2.8890 13 1 2.8668 2.0816 -2.4675 14 1 4.8643 1.1129 -1.4916 15 6 2.6126 -2.2527 -3.0709 16 16 1.6888 -2.3866 -1.6383 17 6 2.0323 -0.7103 1.2305 18 6 1.6938 -2.0321 1.4522 19 6 2.1579 -2.6849 2.5789 20 6 2.9538 -2.0134 3.4881 21 6 3.2879 -0.6901 3.2691 22 6 2.8271 -0.0384 2.1403 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3634 -1.0278 0.0005 26 1 5.3978 0.5582 -5.9586 27 1 2.7738 -3.0416 -3.7907 28 1 1.0689 -2.5556 0.7437 29 1 1.8965 -3.7186 2.7502 30 1 3.3141 -2.5226 4.3697 31 1 3.9094 -0.1653 3.9796 32 1 3.0884 0.9954 1.9692 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405661125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:07 Heat of formation + Delta-G solvation = 37.889331 kcal Electronic energy + Delta-G solvation = -16540.816626 eV Core-core repulsion = 13977.754736 eV Total energy + Delta-G solvation = -2563.061890 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44565 -38.22382 -34.77410 -33.18090 -30.81057 -29.69516 -28.76333 -25.84513 -24.49548 -22.71811 -22.10501 -20.09670 -19.04971 -18.31252 -16.77235 -15.99114 -15.20843 -15.15934 -14.41755 -13.83394 -13.64828 -13.49835 -13.19005 -12.97944 -12.59617 -12.33989 -12.07055 -11.91548 -11.67986 -11.32021 -10.96740 -10.74879 -10.62306 -10.50181 -10.03919 -9.57698 -9.23849 -8.80305 -8.63705 -8.29881 -8.07399 -7.61925 -7.19798 -4.53796 1.42320 1.52635 1.96296 2.50677 3.35720 3.43228 3.52958 3.90119 3.93994 4.10985 4.36051 4.70171 4.87139 5.06775 5.08865 5.23825 5.30597 5.43057 5.53558 5.62404 5.69126 5.88235 6.05280 6.10601 6.17526 6.29001 6.46693 6.58081 6.61329 6.77567 6.91790 7.11440 7.19604 7.58665 8.07403 8.18271 8.72180 9.04578 10.13382 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.007600 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.273085 B = 3683.289086 C = 4175.585967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.022 3.978 3 H 0.101 0.899 4 C 0.086 3.914 5 N -0.481 5.481 6 C 0.210 3.790 7 C -0.479 4.479 8 H 0.080 0.920 9 C 0.042 3.958 10 N -0.823 5.823 11 Si 1.127 2.873 12 H -0.318 1.318 13 H -0.275 1.275 14 H -0.288 1.288 15 C -0.455 4.455 16 S 0.020 5.980 17 C -0.071 4.071 18 C -0.103 4.103 19 C -0.119 4.119 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.110 4.110 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.281 0.719 27 H 0.141 0.859 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 -2.937 15.342 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.001 4.001 3 H 0.120 0.880 4 C -0.195 4.195 5 N -0.200 5.200 6 C 0.089 3.911 7 C -0.513 4.513 8 H 0.098 0.902 9 C -0.176 4.176 10 N -0.447 5.447 11 Si 0.959 3.041 12 H -0.250 1.250 13 H -0.202 1.202 14 H -0.215 1.215 15 C -0.594 4.594 16 S 0.269 5.731 17 C -0.072 4.072 18 C -0.122 4.122 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.140 4.140 22 C -0.128 4.128 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.158 0.842 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.063 -1.741 16.233 17.788 hybrid contribution 0.434 -1.602 -1.852 2.486 sum -6.630 -3.342 14.381 16.185 Atomic orbital electron populations 1.21875 0.92592 1.02757 1.02476 1.18744 0.96122 0.98689 0.86523 0.88047 1.27201 1.00024 0.93993 0.98285 1.65992 1.14658 1.35193 1.04121 1.18094 0.94516 0.87381 0.91069 1.20042 1.25619 1.02854 1.02823 0.90174 1.27493 0.90566 0.97257 1.02320 1.70714 1.29814 1.38134 1.05993 0.82415 0.76945 0.72538 0.72188 1.24973 1.20169 1.21493 1.25059 1.24281 1.02619 1.07403 1.82434 1.55165 1.14342 1.21153 1.19743 0.97757 0.94536 0.95178 1.21091 0.99924 0.94044 0.97122 1.21083 0.98343 0.99709 0.94582 1.21103 0.98943 0.94876 0.99449 1.21082 1.00231 0.95039 0.97636 1.21079 0.97289 1.00198 0.94216 0.91604 0.91566 0.91918 0.90810 0.84157 0.85724 0.86144 0.86393 0.86197 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.92 37.16 0.33 -1.54 16 2 C 0.02 0.36 3.02 -92.92 -0.28 0.08 16 3 H 0.10 1.68 7.88 -51.93 -0.41 1.27 16 4 C 0.09 1.83 6.13 -13.55 -0.08 1.75 16 5 N -0.48 -12.25 5.30 -8.35 -0.04 -12.29 16 6 C 0.21 5.75 6.26 -86.16 -0.54 5.21 16 7 C -0.48 -13.92 9.67 -37.92 -0.37 -14.29 16 8 H 0.08 2.37 8.05 -52.49 -0.42 1.94 16 9 C 0.04 1.21 5.51 -17.34 -0.10 1.11 16 10 N -0.82 -23.62 13.67 55.54 0.76 -22.86 16 11 Si 1.13 28.38 25.68 -169.99 -4.36 24.01 16 12 H -0.32 -7.84 7.11 56.52 0.40 -7.44 16 13 H -0.27 -6.71 6.72 56.52 0.38 -6.33 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 C -0.46 -11.41 10.98 30.54 0.34 -11.07 16 16 S 0.02 0.41 20.20 -107.50 -2.17 -1.76 16 17 C -0.07 -1.09 4.77 -104.62 -0.50 -1.59 16 18 C -0.10 -1.49 8.24 -39.58 -0.33 -1.81 16 19 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 20 C -0.13 -1.47 10.05 -39.59 -0.40 -1.87 16 21 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 22 C -0.11 -1.53 9.67 -39.58 -0.38 -1.91 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.81 7.22 -51.92 -0.37 0.43 16 26 H 0.28 7.77 8.73 -40.82 -0.36 7.42 16 27 H 0.14 3.43 8.06 -52.48 -0.42 3.01 16 28 H 0.13 1.77 5.63 -52.49 -0.30 1.47 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.55 7.95 -52.49 -0.42 1.13 16 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -30.97 283.08 -8.29 -39.25 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -3.63 Total: -0.92 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -3.10 Total: -29.70 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.71 Total: -35.15 kcal Atomic # 14 Polarization: 28.38 SS G_CDS: -4.36 Total: 24.01 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.17 Total: -1.76 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.97 -8.29 -39.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405661125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.142 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds