Wall clock time and date at job start Mon Mar 30 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46824 * 2 1 4 4 C 1.50698 * 109.47102 * 239.99743 * 2 1 3 5 5 N 1.28796 * 124.98934 * 120.24764 * 4 2 1 6 6 C 1.33652 * 116.05775 * 180.22833 * 5 4 2 7 7 C 1.41158 * 122.86368 * 179.82764 * 6 5 4 8 8 H 1.07999 * 119.99650 * 186.32221 * 7 6 5 9 9 C 1.39722 * 119.99774 * 6.32697 * 7 6 5 10 10 N 1.31019 * 119.99564 * 182.94235 * 9 7 6 11 11 Si 1.86793 * 120.00069 * 2.93647 * 9 7 6 12 12 H 1.48506 * 109.46998 * 180.02562 * 11 9 7 13 13 H 1.48503 * 109.47381 * 300.00498 * 11 9 7 14 14 H 1.48506 * 109.47233 * 60.00294 * 11 9 7 15 15 C 1.37706 * 114.27231 * 359.55315 * 6 5 4 16 16 S 1.70986 * 108.84026 * 0.23691 * 15 6 5 17 17 C 1.50702 * 109.47098 * 119.99688 * 2 1 3 18 18 C 1.38233 * 120.00133 * 59.72783 * 17 2 1 19 19 C 1.38236 * 119.99886 * 179.80461 * 18 17 2 20 20 C 1.38233 * 119.99910 * 0.40124 * 19 18 17 21 21 C 1.38227 * 120.00193 * 359.85652 * 20 19 18 22 22 C 1.38235 * 119.99602 * 239.99876 * 17 2 1 23 23 H 1.09002 * 109.47163 * 299.99639 * 1 2 3 24 24 H 1.08990 * 109.47511 * 60.00458 * 1 2 3 25 25 H 1.09009 * 109.47052 * 180.02562 * 1 2 3 26 26 H 0.97002 * 120.00100 * 354.80936 * 10 9 7 27 27 H 1.08003 * 125.57645 * 180.23026 * 15 6 5 28 28 H 1.07999 * 119.99677 * 359.97438 * 18 17 2 29 29 H 1.08001 * 119.99990 * 180.23231 * 19 18 17 30 30 H 1.08006 * 119.99603 * 179.82929 * 20 19 18 31 31 H 1.08002 * 120.00313 * 179.97438 * 21 20 19 32 32 H 1.08000 * 120.00722 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7796 -0.1807 -2.1358 6 6 3.1173 -0.9744 -3.1567 7 6 3.9272 -0.5410 -4.2285 8 1 4.0880 -1.1866 -5.0792 9 6 4.5210 0.7232 -4.1887 10 7 5.2253 1.1484 -5.2083 11 14 4.3104 1.8069 -2.6820 12 1 5.0322 3.0881 -2.8890 13 1 2.8668 2.0816 -2.4675 14 1 4.8643 1.1129 -1.4916 15 6 2.6126 -2.2527 -3.0709 16 16 1.6888 -2.3866 -1.6383 17 6 2.0323 -0.7103 1.2305 18 6 1.6938 -2.0321 1.4522 19 6 2.1579 -2.6849 2.5789 20 6 2.9538 -2.0134 3.4881 21 6 3.2879 -0.6901 3.2691 22 6 2.8271 -0.0384 2.1403 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3634 -1.0278 0.0005 26 1 5.3978 0.5582 -5.9586 27 1 2.7738 -3.0416 -3.7907 28 1 1.0689 -2.5556 0.7437 29 1 1.8965 -3.7186 2.7502 30 1 3.3141 -2.5226 4.3697 31 1 3.9094 -0.1653 3.9796 32 1 3.0884 0.9954 1.9692 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405661125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:07 Heat of formation + Delta-G solvation = 20.600218 kcal Electronic energy + Delta-G solvation = -16541.566338 eV Core-core repulsion = 13977.754736 eV Total energy + Delta-G solvation = -2563.811602 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70269 -39.86957 -36.16778 -35.12012 -31.77677 -31.28786 -30.08744 -27.90522 -25.84576 -23.90665 -23.28646 -21.66340 -20.84033 -20.20402 -18.06492 -17.56805 -16.82099 -16.22551 -15.83333 -15.32250 -15.24969 -15.01189 -14.65366 -14.31128 -14.17565 -13.85885 -13.63555 -13.09528 -12.97150 -12.70193 -12.61500 -12.47015 -11.91235 -11.76642 -11.73736 -11.64437 -11.30396 -10.16834 -9.95127 -9.77655 -9.68086 -9.50877 -9.33996 -6.68534 0.06837 0.47766 0.54999 0.77562 1.41986 1.43665 1.50461 1.96132 2.10329 2.36683 2.88217 3.14080 3.30209 3.72913 4.02128 4.17550 4.28500 4.34868 4.37736 4.58320 4.67286 4.72406 4.88429 4.92529 4.99227 5.13383 5.15531 5.21079 5.25937 5.38041 5.61887 5.66773 5.72609 5.92136 6.06712 6.16225 6.63102 7.10346 7.96714 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.007600 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.273085 B = 3683.289086 C = 4175.585967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.018 3.982 3 H 0.100 0.900 4 C 0.090 3.910 5 N -0.519 5.519 6 C 0.191 3.809 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.012 3.988 10 N -0.848 5.848 11 Si 1.164 2.836 12 H -0.313 1.313 13 H -0.266 1.266 14 H -0.289 1.289 15 C -0.475 4.475 16 S 0.112 5.888 17 C -0.092 4.092 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.125 4.125 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.276 0.724 27 H 0.138 0.862 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 -3.626 18.947 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.004 4.004 3 H 0.118 0.882 4 C -0.190 4.190 5 N -0.238 5.238 6 C 0.069 3.931 7 C -0.551 4.551 8 H 0.072 0.928 9 C -0.202 4.202 10 N -0.473 5.473 11 Si 0.993 3.007 12 H -0.244 1.244 13 H -0.193 1.193 14 H -0.216 1.216 15 C -0.613 4.613 16 S 0.363 5.637 17 C -0.093 4.093 18 C -0.138 4.138 19 C -0.140 4.140 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.143 4.143 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.156 0.844 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.432 -2.465 19.840 21.698 hybrid contribution 0.725 -1.618 -2.784 3.301 sum -7.708 -4.083 17.056 19.157 Atomic orbital electron populations 1.21891 0.90120 1.03557 1.03679 1.18992 0.98087 0.98281 0.85059 0.88151 1.28210 0.97527 0.94877 0.98387 1.65966 1.17238 1.35749 1.04884 1.18195 0.94735 0.88525 0.91637 1.20027 1.28177 1.03466 1.03466 0.92778 1.28423 0.90003 0.98077 1.03685 1.70753 1.31671 1.38275 1.06561 0.81935 0.77331 0.71550 0.69888 1.24446 1.19252 1.21643 1.25515 1.24080 1.02041 1.09637 1.82030 1.52212 1.12712 1.16780 1.19696 0.99344 0.95185 0.95090 1.21157 1.00643 0.93871 0.98143 1.21415 0.97847 1.00864 0.93903 1.21517 0.97797 0.94727 1.00032 1.21438 0.99851 0.95493 0.97339 1.21300 0.97321 1.00845 0.94830 0.88693 0.92144 0.91282 0.91408 0.84410 0.86047 0.83805 0.83400 0.83708 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.92 71.98 0.64 -2.59 16 2 C 0.02 0.57 3.02 -12.29 -0.04 0.53 16 3 H 0.10 3.14 7.88 -2.39 -0.02 3.12 16 4 C 0.09 3.68 6.13 88.55 0.54 4.23 16 5 N -0.52 -26.20 5.30 -180.34 -0.96 -27.16 16 6 C 0.19 10.63 6.26 39.46 0.25 10.88 16 7 C -0.52 -31.36 9.67 23.35 0.23 -31.14 16 8 H 0.05 3.42 8.05 -2.91 -0.02 3.39 16 9 C 0.01 0.68 5.51 85.17 0.47 1.15 16 10 N -0.85 -50.58 13.67 21.79 0.30 -50.28 16 11 Si 1.16 58.50 25.68 68.60 1.76 60.26 16 12 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 13 H -0.27 -12.80 6.72 99.48 0.67 -12.13 16 14 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 15 C -0.47 -23.72 10.98 67.69 0.74 -22.97 16 16 S 0.11 4.30 20.20 -56.49 -1.14 3.16 16 17 C -0.09 -2.57 4.77 -19.87 -0.09 -2.66 16 18 C -0.12 -3.06 8.24 22.27 0.18 -2.87 16 19 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 20 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 21 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 22 C -0.12 -3.13 9.67 22.27 0.22 -2.92 16 23 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.07 1.55 7.22 -2.38 -0.02 1.53 16 26 H 0.28 16.10 8.73 -92.71 -0.81 15.30 16 27 H 0.14 6.81 8.06 -2.91 -0.02 6.78 16 28 H 0.12 3.04 5.63 -2.91 -0.02 3.03 16 29 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.13 2.96 7.95 -2.91 -0.02 2.94 16 Total: -1.00 -68.57 283.08 4.81 -63.76 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.04 Total: 5.40 kcal Atomic # 6 Polarization: -58.96 SS G_CDS: 3.81 Total: -55.15 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -0.66 Total: -77.44 kcal Atomic # 14 Polarization: 58.50 SS G_CDS: 1.76 Total: 60.26 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.14 Total: 3.16 kcal Total: -68.57 4.81 -63.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405661125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.360 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds