Wall clock time and date at job start Mon Mar 30 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99306 * 2 1 4 4 C 1.50702 * 109.47565 * 269.99830 * 3 2 1 5 5 H 1.08003 * 119.99295 * 0.02562 * 4 3 2 6 6 C 1.37868 * 120.00203 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00268 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99956 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46573 * 60.00295 * 8 6 4 10 10 H 1.48501 * 109.47059 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47244 * 300.00248 * 8 6 4 12 12 C 1.34769 * 120.00690 * 180.02562 * 2 1 3 13 13 O 1.21699 * 120.00657 * 183.33579 * 12 2 1 14 14 C 1.46662 * 119.99562 * 3.33580 * 12 2 1 15 15 C 1.36549 * 125.98418 * 173.22751 * 14 12 2 16 16 C 1.40370 * 106.70264 * 180.02562 * 15 14 12 17 17 C 1.35120 * 107.11773 * 359.97438 * 16 15 14 18 18 C 1.50700 * 125.61940 * 179.97438 * 17 16 15 19 19 F 1.39906 * 109.47050 * 300.00483 * 18 17 16 20 20 F 1.39902 * 109.47201 * 60.00369 * 18 17 16 21 21 O 1.33929 * 108.77039 * 0.23439 * 17 16 15 22 22 H 1.09002 * 109.46853 * 264.00378 * 1 2 3 23 23 H 1.08996 * 109.47379 * 24.00789 * 1 2 3 24 24 H 1.09001 * 109.46748 * 144.00617 * 1 2 3 25 25 H 1.08997 * 109.47383 * 30.00622 * 3 2 1 26 26 H 1.09007 * 109.46708 * 149.99844 * 3 2 1 27 27 H 0.96993 * 120.00530 * 180.02562 * 7 6 4 28 28 H 1.07997 * 126.65071 * 359.97438 * 15 14 12 29 29 H 1.08000 * 126.44010 * 180.02562 * 16 15 14 30 30 H 1.08992 * 109.47543 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4486 1.7040 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1266 2.8777 -1.6727 7 7 3.5547 3.6174 -0.6731 8 14 3.4386 3.4167 -3.4339 9 1 2.1412 3.5945 -4.1342 10 1 4.1809 4.7029 -3.4338 11 1 4.2411 2.3815 -4.1336 12 6 2.1390 -1.1671 -0.0005 13 8 3.3544 -1.1680 0.0608 14 6 1.4076 -2.4361 -0.0750 15 6 1.9635 -3.6755 -0.2141 16 6 0.9017 -4.5932 -0.2407 17 6 -0.2411 -3.8829 -0.1177 18 6 -1.6340 -4.4578 -0.0969 19 9 -1.8745 -5.1407 -1.2941 20 9 -1.7566 -5.3444 0.9784 21 8 0.0675 -2.5831 -0.0228 22 1 -0.3633 -0.1074 1.0221 23 1 -0.3634 0.9387 -0.4181 24 1 -0.3633 -0.8315 -0.6040 25 1 1.6083 2.0284 0.5139 26 1 3.1498 1.1386 0.5139 27 1 4.0314 4.4433 -0.8502 28 1 3.0160 -3.9052 -0.2900 29 1 0.9829 -5.6656 -0.3400 30 1 -2.3585 -3.6510 0.0126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599152782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:00 Heat of formation + Delta-G solvation = -110.849399 kcal Electronic energy + Delta-G solvation = -19026.296460 eV Core-core repulsion = 15459.802373 eV Total energy + Delta-G solvation = -3566.494086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.38432 -47.38944 -42.81241 -38.84611 -35.18433 -33.26816 -32.67014 -31.18981 -28.19874 -26.72347 -25.70088 -23.48413 -21.85669 -21.39878 -19.64212 -18.01533 -17.74403 -17.49505 -16.82314 -16.67379 -16.16851 -15.48326 -14.45754 -14.37122 -14.20711 -13.95049 -13.74632 -13.59305 -13.29440 -13.17807 -12.78839 -12.57858 -12.18127 -11.77280 -11.55320 -11.26583 -10.96880 -10.63865 -10.25901 -10.14995 -9.77525 -9.52347 -8.85405 -8.50580 -7.84260 -6.11961 -4.17972 0.96560 2.16297 2.17684 3.28565 3.33067 3.35105 3.49409 3.60642 3.71020 4.00840 4.29576 4.39253 4.59901 4.76031 4.90547 5.22648 5.46591 5.49212 5.69263 5.74886 5.86204 6.18508 6.22498 6.63599 6.94199 7.26128 7.35869 7.82878 8.10694 8.13520 8.63698 8.87352 9.47456 10.96145 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.004622 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.579022 B = 6057.040060 C = 6182.371868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.584 5.584 3 C 0.243 3.757 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.582 3.418 13 O -0.514 6.514 14 C -0.018 4.018 15 C -0.146 4.146 16 C -0.153 4.153 17 C -0.107 4.107 18 C 0.362 3.638 19 F -0.186 7.186 20 F -0.186 7.186 21 O -0.139 6.139 22 H 0.049 0.951 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.266 0.734 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 -14.199 1.913 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.314 5.314 3 C 0.125 3.875 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.367 3.633 13 O -0.392 6.392 14 C -0.072 4.072 15 C -0.167 4.167 16 C -0.173 4.173 17 C -0.160 4.160 18 C 0.308 3.692 19 F -0.167 7.167 20 F -0.167 7.167 21 O -0.035 6.035 22 H 0.068 0.932 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.184 0.816 29 H 0.176 0.824 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.827 -13.748 2.028 17.616 hybrid contribution 0.231 0.051 -1.039 1.065 sum -10.595 -13.697 0.989 17.345 Atomic orbital electron populations 1.21891 0.80576 1.03209 1.00926 1.48178 1.06874 1.07490 1.68904 1.19467 0.92753 0.77305 0.97975 1.21363 1.37194 1.06672 0.91975 0.92344 1.24925 0.95107 0.96222 0.97639 1.69914 1.37964 1.14353 1.30900 0.86518 0.78442 0.77886 0.84368 1.20172 1.21062 1.20082 1.16645 0.86354 0.81020 0.79279 1.90876 1.11704 1.85366 1.51216 1.23042 0.79259 0.97579 1.07305 1.21972 1.01287 0.90243 1.03182 1.21631 0.90940 1.01218 1.03471 1.22821 0.96889 0.83593 1.12647 1.19049 0.91695 0.86495 0.71964 1.93067 1.94791 1.82163 1.46669 1.93062 1.96471 1.71492 1.55685 1.84290 1.24585 1.24610 1.70051 0.93210 0.89969 0.91399 0.94308 0.93305 0.92484 0.81628 0.82365 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 9.63 59.85 0.58 1.84 16 2 N -0.58 -12.52 2.86 -184.51 -0.53 -13.05 16 3 C 0.24 6.25 5.16 -5.19 -0.03 6.23 16 4 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 5 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.58 12.48 7.64 -12.86 -0.10 12.38 16 13 O -0.51 -12.81 16.43 5.19 0.09 -12.73 16 14 C -0.02 -0.32 6.77 -36.79 -0.25 -0.56 16 15 C -0.15 -2.18 10.63 -39.39 -0.42 -2.60 16 16 C -0.15 -1.91 10.77 -39.89 -0.43 -2.34 16 17 C -0.11 -1.32 6.75 -35.42 -0.24 -1.56 16 18 C 0.36 3.31 5.76 36.01 0.21 3.51 16 19 F -0.19 -1.90 17.32 2.25 0.04 -1.87 16 20 F -0.19 -1.87 17.32 2.25 0.04 -1.83 16 21 O -0.14 -2.01 7.28 5.00 0.04 -1.97 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.08 1.32 8.03 -51.93 -0.42 0.91 16 24 H 0.07 1.00 5.39 -51.93 -0.28 0.72 16 25 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 26 H 0.05 1.40 7.38 -51.93 -0.38 1.01 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 29 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -31.85 280.70 -4.21 -36.06 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: -2.74 Total: -3.45 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.10 Total: 3.40 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.21 Total: -38.32 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.12 Total: -14.70 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.85 -4.21 -36.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599152782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.785 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds