Wall clock time and date at job start Mon Mar 30 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99306 * 2 1 4 4 C 1.50702 * 109.47565 * 269.99830 * 3 2 1 5 5 H 1.08003 * 119.99295 * 0.02562 * 4 3 2 6 6 C 1.37868 * 120.00203 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00268 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99956 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46573 * 60.00295 * 8 6 4 10 10 H 1.48501 * 109.47059 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47244 * 300.00248 * 8 6 4 12 12 C 1.34769 * 120.00690 * 180.02562 * 2 1 3 13 13 O 1.21699 * 120.00657 * 183.33579 * 12 2 1 14 14 C 1.46662 * 119.99562 * 3.33580 * 12 2 1 15 15 C 1.36549 * 125.98418 * 173.22751 * 14 12 2 16 16 C 1.40370 * 106.70264 * 180.02562 * 15 14 12 17 17 C 1.35120 * 107.11773 * 359.97438 * 16 15 14 18 18 C 1.50700 * 125.61940 * 179.97438 * 17 16 15 19 19 F 1.39906 * 109.47050 * 300.00483 * 18 17 16 20 20 F 1.39902 * 109.47201 * 60.00369 * 18 17 16 21 21 O 1.33929 * 108.77039 * 0.23439 * 17 16 15 22 22 H 1.09002 * 109.46853 * 264.00378 * 1 2 3 23 23 H 1.08996 * 109.47379 * 24.00789 * 1 2 3 24 24 H 1.09001 * 109.46748 * 144.00617 * 1 2 3 25 25 H 1.08997 * 109.47383 * 30.00622 * 3 2 1 26 26 H 1.09007 * 109.46708 * 149.99844 * 3 2 1 27 27 H 0.96993 * 120.00530 * 180.02562 * 7 6 4 28 28 H 1.07997 * 126.65071 * 359.97438 * 15 14 12 29 29 H 1.08000 * 126.44010 * 180.02562 * 16 15 14 30 30 H 1.08992 * 109.47543 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4486 1.7040 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1266 2.8777 -1.6727 7 7 3.5547 3.6174 -0.6731 8 14 3.4386 3.4167 -3.4339 9 1 2.1412 3.5945 -4.1342 10 1 4.1809 4.7029 -3.4338 11 1 4.2411 2.3815 -4.1336 12 6 2.1390 -1.1671 -0.0005 13 8 3.3544 -1.1680 0.0608 14 6 1.4076 -2.4361 -0.0750 15 6 1.9635 -3.6755 -0.2141 16 6 0.9017 -4.5932 -0.2407 17 6 -0.2411 -3.8829 -0.1177 18 6 -1.6340 -4.4578 -0.0969 19 9 -1.8745 -5.1407 -1.2941 20 9 -1.7566 -5.3444 0.9784 21 8 0.0675 -2.5831 -0.0228 22 1 -0.3633 -0.1074 1.0221 23 1 -0.3634 0.9387 -0.4181 24 1 -0.3633 -0.8315 -0.6040 25 1 1.6083 2.0284 0.5139 26 1 3.1498 1.1386 0.5139 27 1 4.0314 4.4433 -0.8502 28 1 3.0160 -3.9052 -0.2900 29 1 0.9829 -5.6656 -0.3400 30 1 -2.3585 -3.6510 0.0126 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599152782.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:59 Heat of formation + Delta-G solvation = -131.301588 kcal Electronic energy + Delta-G solvation = -19027.183333 eV Core-core repulsion = 15459.802373 eV Total energy + Delta-G solvation = -3567.380960 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.13734 -48.14454 -43.95299 -40.52331 -36.90719 -34.85141 -34.29952 -32.34641 -30.01634 -27.97603 -27.16715 -25.20483 -23.11843 -22.58826 -21.04321 -19.06678 -18.77214 -18.53247 -18.28280 -18.18943 -17.39819 -17.27597 -16.33994 -15.89810 -15.25062 -15.00593 -14.76208 -14.49910 -14.42926 -14.33901 -14.24762 -14.03061 -13.86267 -13.46289 -13.11296 -12.77709 -12.54232 -12.35309 -12.22968 -11.78419 -11.27636 -11.24750 -10.66243 -10.07199 -9.57073 -8.25519 -6.40980 -0.25106 1.05646 1.06818 1.37981 1.41677 1.49315 1.99053 2.16229 2.38822 2.79677 3.04468 3.05633 3.51659 3.70515 3.73961 3.86187 4.25042 4.40444 4.44584 4.60643 4.67674 4.84890 4.98950 5.13166 5.15032 5.42292 5.57135 5.73504 5.98562 6.46068 6.65708 7.01977 7.30406 8.81892 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.004622 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.579022 B = 6057.040060 C = 6182.371868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.594 5.594 3 C 0.257 3.743 4 C -0.550 4.550 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.925 5.925 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.578 3.422 13 O -0.567 6.567 14 C -0.054 4.054 15 C -0.132 4.132 16 C -0.159 4.159 17 C -0.090 4.090 18 C 0.367 3.633 19 F -0.189 7.189 20 F -0.189 7.189 21 O -0.137 6.137 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.035 0.965 26 H 0.007 0.993 27 H 0.269 0.731 28 H 0.169 0.831 29 H 0.188 0.812 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 -15.567 0.939 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.323 5.323 3 C 0.137 3.863 4 C -0.589 4.589 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.792 3.208 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.366 3.634 13 O -0.449 6.449 14 C -0.107 4.107 15 C -0.153 4.153 16 C -0.178 4.178 17 C -0.142 4.142 18 C 0.314 3.686 19 F -0.171 7.171 20 F -0.170 7.170 21 O -0.033 6.033 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.078 0.922 28 H 0.186 0.814 29 H 0.205 0.795 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.971 -15.130 1.059 19.957 hybrid contribution 0.815 0.342 -0.683 1.118 sum -12.156 -14.787 0.376 19.146 Atomic orbital electron populations 1.22124 0.77379 1.04071 1.02995 1.48159 1.08852 1.06261 1.68990 1.18968 0.91462 0.79256 0.96651 1.21625 1.37585 1.06971 0.92687 0.92792 1.25826 0.94612 0.96204 1.02073 1.70027 1.38473 1.14791 1.33133 0.85455 0.78877 0.77432 0.78989 1.18490 1.20173 1.20294 1.17070 0.86135 0.82228 0.77982 1.90824 1.14010 1.86548 1.53505 1.22096 0.80575 0.95995 1.12026 1.22220 1.02238 0.90047 1.00802 1.21968 0.89989 1.02405 1.03443 1.23600 0.98697 0.82572 1.09368 1.19430 0.90494 0.87205 0.71519 1.93068 1.94574 1.82357 1.47056 1.93065 1.96285 1.71739 1.55867 1.84216 1.22959 1.25873 1.70223 0.90678 0.89991 0.89427 0.94732 0.97449 0.92178 0.81372 0.79456 0.80767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.39 9.63 127.77 1.23 3.62 16 2 N -0.59 -26.02 2.86 -855.89 -2.45 -28.46 16 3 C 0.26 13.79 5.16 85.63 0.44 14.23 16 4 C -0.55 -31.43 9.39 25.60 0.24 -31.19 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.71 5.46 84.65 0.46 1.18 16 7 N -0.93 -55.03 13.29 21.44 0.28 -54.75 16 8 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 9 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 C 0.58 25.54 7.64 86.44 0.66 26.20 16 13 O -0.57 -29.84 16.43 -4.35 -0.07 -29.91 16 14 C -0.05 -1.82 6.77 24.08 0.16 -1.66 16 15 C -0.13 -3.80 10.63 22.39 0.24 -3.56 16 16 C -0.16 -3.49 10.77 22.07 0.24 -3.25 16 17 C -0.09 -1.90 6.75 24.97 0.17 -1.73 16 18 C 0.37 5.13 5.76 71.24 0.41 5.54 16 19 F -0.19 -3.15 17.32 44.97 0.78 -2.37 16 20 F -0.19 -3.06 17.32 44.97 0.78 -2.28 16 21 O -0.14 -3.61 7.28 -5.02 -0.04 -3.64 16 22 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.08 2.57 8.03 -2.39 -0.02 2.55 16 24 H 0.09 2.41 5.39 -2.39 -0.01 2.40 16 25 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 26 H 0.01 0.45 7.38 -2.38 -0.02 0.43 16 27 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.17 4.63 8.06 -2.91 -0.02 4.61 16 29 H 0.19 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.18 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -71.36 280.70 6.74 -64.62 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 1.17 Total: 1.18 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 4.25 Total: 9.38 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -2.16 Total: -83.21 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.11 Total: -33.56 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.56 Total: -4.64 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -71.36 6.74 -64.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599152782.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.682 kcal (2) G-P(sol) polarization free energy of solvation -71.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds