Wall clock time and date at job start Mon Mar 30 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21610 * 120.00383 * 0.02562 * 13 12 2 15 15 C 1.47380 * 119.99978 * 180.02562 * 13 12 2 16 16 C 1.36418 * 127.19196 * 359.68268 * 15 13 12 17 17 O 1.33652 * 108.39760 * 179.89452 * 16 15 13 18 18 C 1.34215 * 110.90692 * 0.39111 * 17 16 15 19 19 C 1.50701 * 125.43403 * 179.76192 * 18 17 16 20 20 F 1.39900 * 109.47414 * 30.00152 * 19 18 17 21 21 F 1.39897 * 109.46695 * 150.00028 * 19 18 17 22 22 C 1.34171 * 109.12373 * 359.75880 * 18 17 16 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.08004 * 125.80040 * 0.02562 * 16 15 13 29 29 H 1.09000 * 109.47284 * 269.99544 * 19 18 17 30 30 H 1.08004 * 127.02359 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8573 1.1618 2.4119 15 6 2.6388 -0.7126 3.5604 16 6 2.9978 -2.0244 3.6665 17 8 3.3890 -2.2543 4.9237 18 6 3.2954 -1.1399 5.6658 19 6 3.6471 -1.0313 7.1271 20 9 4.6628 -1.9439 7.4315 21 9 4.0879 0.2669 7.4053 22 6 2.8388 -0.1382 4.8988 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 2.9725 -2.7528 2.8695 29 1 2.7666 -1.2531 7.7302 30 1 2.6560 0.8820 5.2025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599220670.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:23 Heat of formation + Delta-G solvation = -126.171129 kcal Electronic energy + Delta-G solvation = -18638.396586 eV Core-core repulsion = 15071.238100 eV Total energy + Delta-G solvation = -3567.158486 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.37190 -47.39882 -42.68441 -38.69855 -34.86454 -33.08033 -32.49374 -31.29532 -28.83981 -26.10881 -25.30550 -23.74509 -21.30280 -20.82349 -19.44133 -18.66764 -18.00615 -17.40602 -16.55179 -16.29457 -16.11487 -15.40154 -15.21854 -14.36716 -14.20202 -13.99185 -13.75831 -13.59466 -13.05196 -13.00156 -12.70549 -12.35874 -11.81559 -11.70612 -11.13985 -11.00415 -10.81038 -10.38536 -10.27531 -9.87081 -9.30568 -9.11324 -8.98535 -8.59879 -8.00394 -6.16291 -4.26284 1.25207 1.82353 2.25844 3.23112 3.28692 3.29400 3.44943 3.72206 3.87222 4.07671 4.34272 4.39665 4.47877 4.69786 4.89468 5.16101 5.43474 5.60510 5.72427 6.10228 6.71752 6.78020 6.91250 7.09277 7.36444 7.49624 7.63811 7.85899 8.09666 8.56071 8.71908 9.01021 9.41156 10.89693 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.043988 B = 0.004016 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.383254 B = 6969.610237 C = 7331.668380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.570 3.430 14 O -0.547 6.547 15 C -0.221 4.221 16 C 0.034 3.966 17 O -0.158 6.158 18 C -0.117 4.117 19 C 0.368 3.632 20 F -0.193 7.193 21 F -0.184 7.184 22 C -0.105 4.105 23 H 0.027 0.973 24 H 0.015 0.985 25 H 0.091 0.909 26 H 0.266 0.734 27 H 0.386 0.614 28 H 0.221 0.779 29 H 0.138 0.862 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -7.026 16.045 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.349 5.349 13 C 0.355 3.645 14 O -0.426 6.426 15 C -0.225 4.225 16 C -0.037 4.037 17 O -0.054 6.054 18 C -0.166 4.166 19 C 0.314 3.686 20 F -0.174 7.174 21 F -0.165 7.165 22 C -0.125 4.125 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.218 0.782 28 H 0.237 0.763 29 H 0.155 0.845 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.037 -6.290 16.031 17.487 hybrid contribution 0.470 -0.749 -1.060 1.381 sum 3.507 -7.039 14.971 16.911 Atomic orbital electron populations 1.22085 0.98267 0.99201 1.01042 1.18801 0.91150 0.94088 0.79624 0.93135 1.21152 1.32726 1.13356 0.90265 0.92087 1.24887 0.94736 0.94936 0.99069 1.69891 1.35628 1.22355 1.24092 0.86486 0.79183 0.79555 0.81743 1.21083 1.20147 1.20141 1.46428 1.64868 1.13316 1.10296 1.17213 0.78665 0.86497 0.82164 1.90756 1.51457 1.15457 1.84934 1.21960 1.10149 0.94204 0.96216 1.24707 0.97380 0.97284 0.84293 1.83696 1.66829 1.34791 1.20095 1.22494 1.12388 0.86879 0.94831 1.19499 0.88264 0.72651 0.88212 1.93044 1.63611 1.66798 1.93935 1.93067 1.91222 1.38413 1.93818 1.22611 0.99094 0.99914 0.90871 0.95400 0.96567 0.89007 0.92433 0.78155 0.76259 0.84460 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.65 2.56 -69.09 -0.18 6.47 16 3 H 0.05 1.47 7.58 -51.92 -0.39 1.08 16 4 C -0.54 -13.93 8.73 -34.44 -0.30 -14.23 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.55 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.70 -14.31 5.06 -56.03 -0.28 -14.60 16 13 C 0.57 11.60 7.78 -12.54 -0.10 11.51 16 14 O -0.55 -13.40 16.65 5.27 0.09 -13.31 16 15 C -0.22 -3.48 6.31 -103.28 -0.65 -4.13 16 16 C 0.03 0.41 11.61 30.08 0.35 0.76 16 17 O -0.16 -1.93 10.50 7.65 0.08 -1.85 16 18 C -0.12 -1.39 6.90 -35.74 -0.25 -1.64 16 19 C 0.37 3.29 5.82 36.01 0.21 3.50 16 20 F -0.19 -2.03 17.30 2.25 0.04 -1.99 16 21 F -0.18 -1.92 17.01 2.25 0.04 -1.88 16 22 C -0.10 -1.48 10.54 -37.46 -0.39 -1.87 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.39 6.49 7.51 -40.82 -0.31 6.18 16 28 H 0.22 1.84 7.47 -52.48 -0.39 1.45 16 29 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.17 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 280.66 15.07 4.23 4.23 Total: -1.00 -32.00 280.66 -3.90 -35.90 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.64 Total: 3.38 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.06 Total: -1.21 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.34 Total: -38.52 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.17 Total: -15.16 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.08 Total: -3.87 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.00 -3.90 -35.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599220670.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.274 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds