Wall clock time and date at job start Mon Mar 30 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21610 * 120.00383 * 0.02562 * 13 12 2 15 15 C 1.47380 * 119.99978 * 180.02562 * 13 12 2 16 16 C 1.36418 * 127.19196 * 359.68268 * 15 13 12 17 17 O 1.33652 * 108.39760 * 179.89452 * 16 15 13 18 18 C 1.34215 * 110.90692 * 0.39111 * 17 16 15 19 19 C 1.50701 * 125.43403 * 179.76192 * 18 17 16 20 20 F 1.39900 * 109.47414 * 30.00152 * 19 18 17 21 21 F 1.39897 * 109.46695 * 150.00028 * 19 18 17 22 22 C 1.34171 * 109.12373 * 359.75880 * 18 17 16 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.08004 * 125.80040 * 0.02562 * 16 15 13 29 29 H 1.09000 * 109.47284 * 269.99544 * 19 18 17 30 30 H 1.08004 * 127.02359 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8573 1.1618 2.4119 15 6 2.6388 -0.7126 3.5604 16 6 2.9978 -2.0244 3.6665 17 8 3.3890 -2.2543 4.9237 18 6 3.2954 -1.1399 5.6658 19 6 3.6471 -1.0313 7.1271 20 9 4.6628 -1.9439 7.4315 21 9 4.0879 0.2669 7.4053 22 6 2.8388 -0.1382 4.8988 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 2.9725 -2.7528 2.8695 29 1 2.7666 -1.2531 7.7302 30 1 2.6560 0.8820 5.2025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599220670.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:23 Heat of formation + Delta-G solvation = -148.292138 kcal Electronic energy + Delta-G solvation = -18639.355825 eV Core-core repulsion = 15071.238100 eV Total energy + Delta-G solvation = -3568.117725 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.081 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.12697 -48.16288 -43.72406 -40.38362 -36.75410 -34.53047 -34.02205 -32.46295 -30.61397 -27.35704 -26.97058 -25.17003 -22.59310 -22.30005 -20.96291 -19.89103 -18.73996 -18.36185 -18.09170 -17.37076 -17.11374 -17.01577 -16.87465 -16.00724 -15.67155 -15.04414 -14.86206 -14.54135 -14.49596 -14.35860 -13.91456 -13.72149 -13.64852 -13.00768 -12.89117 -12.74538 -12.51571 -12.27526 -12.15797 -11.14232 -11.03648 -11.01938 -10.59622 -10.05806 -9.77846 -8.17451 -6.35510 0.21599 0.67115 1.35397 1.46879 1.48890 1.56633 2.26201 2.36179 2.48610 2.82436 3.09060 3.13573 3.51358 3.64360 3.84981 3.93304 4.29230 4.40594 4.73159 4.76658 4.91312 4.99758 5.07654 5.41059 5.56694 5.65803 5.69611 5.88485 6.07665 6.70828 6.88588 7.30098 7.46863 8.88929 Molecular weight = 259.08amu Principal moments of inertia in cm(-1) A = 0.043988 B = 0.004016 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.383254 B = 6969.610237 C = 7331.668380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.078 0.922 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.288 1.288 10 H -0.271 1.271 11 H -0.261 1.261 12 N -0.695 5.695 13 C 0.570 3.430 14 O -0.600 6.600 15 C -0.263 4.263 16 C 0.074 3.926 17 O -0.152 6.152 18 C -0.103 4.103 19 C 0.369 3.631 20 F -0.200 7.200 21 F -0.194 7.194 22 C -0.127 4.127 23 H 0.044 0.956 24 H 0.010 0.990 25 H 0.068 0.932 26 H 0.266 0.734 27 H 0.406 0.594 28 H 0.261 0.739 29 H 0.191 0.809 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -9.865 16.804 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.096 0.904 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.214 1.214 10 H -0.196 1.196 11 H -0.186 1.186 12 N -0.343 5.343 13 C 0.358 3.642 14 O -0.484 6.484 15 C -0.267 4.267 16 C 0.003 3.997 17 O -0.047 6.047 18 C -0.153 4.153 19 C 0.316 3.684 20 F -0.181 7.181 21 F -0.175 7.175 22 C -0.147 4.147 23 H 0.063 0.937 24 H 0.029 0.971 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.242 0.758 28 H 0.277 0.723 29 H 0.207 0.793 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.868 -9.180 16.824 19.552 hybrid contribution 0.241 0.138 -1.229 1.260 sum 4.109 -9.042 15.595 18.489 Atomic orbital electron populations 1.21905 0.98063 0.99723 0.99593 1.18408 0.91311 0.91991 0.81626 0.98406 1.21503 1.32805 1.13763 0.90521 0.90384 1.25819 0.94802 0.95549 1.02395 1.70053 1.36893 1.23948 1.24731 0.85362 0.78585 0.78763 0.77410 1.21392 1.19628 1.18603 1.46087 1.64888 1.14136 1.09213 1.17767 0.77358 0.85959 0.83111 1.90719 1.53778 1.17979 1.85880 1.21545 1.14048 0.96044 0.95085 1.25321 0.93402 0.96205 0.84747 1.83762 1.66192 1.34734 1.20009 1.22951 1.10544 0.85851 0.95913 1.20073 0.89504 0.71951 0.86920 1.93032 1.64288 1.67025 1.93774 1.93053 1.91478 1.39314 1.93672 1.22639 1.00714 1.00551 0.90787 0.93671 0.97060 0.91372 0.92521 0.75775 0.72330 0.79303 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.07 16 2 C 0.27 13.88 2.56 44.24 0.11 13.99 16 3 H 0.00 -0.12 7.58 -2.38 -0.02 -0.14 16 4 C -0.55 -28.24 8.73 25.60 0.22 -28.02 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -52.19 11.32 21.45 0.24 -51.95 16 8 Si 0.97 41.01 29.54 68.60 2.03 43.03 16 9 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 12 N -0.69 -28.22 5.06 -449.42 -2.27 -30.49 16 13 C 0.57 23.61 7.78 86.65 0.67 24.28 16 14 O -0.60 -30.94 16.65 -4.06 -0.07 -31.01 16 15 C -0.26 -8.04 6.31 -18.99 -0.12 -8.16 16 16 C 0.07 1.56 11.61 67.39 0.78 2.34 16 17 O -0.15 -3.18 10.50 4.47 0.05 -3.14 16 18 C -0.10 -2.20 6.90 24.76 0.17 -2.03 16 19 C 0.37 5.49 5.82 71.24 0.41 5.91 16 20 F -0.20 -3.63 17.30 44.97 0.78 -2.85 16 21 F -0.19 -3.68 17.01 44.97 0.76 -2.92 16 22 C -0.13 -3.48 10.54 23.65 0.25 -3.23 16 23 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 26 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.41 12.87 7.51 -92.71 -0.70 12.17 16 28 H 0.26 3.09 7.47 -2.91 -0.02 3.07 16 29 H 0.19 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.16 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -72.30 280.66 5.64 -66.66 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.50 Total: 12.43 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 3.62 Total: 0.24 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.03 Total: -82.44 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.02 Total: -34.15 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.54 Total: -5.77 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Total: -72.30 5.64 -66.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599220670.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.633 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds